Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium440g00007 ATGGCTACCATTTCTTCAACATGGTACGTGTTTCTCCCCATAATTTTATCCTTATTCCCCACAACAATGTGTGCAACAGTGCTACAAGACCTCAAAAACTTACATCAACCCCCAGGCTTTAACTCTACAATTCTCTCAAACTGTCTCAACAATCCCTCTCTTAGGTACTGCTCTTCGTCTCCAATGATGGACTTTGATGAAATATTCAAGTTTACCATTGTTGCAAGCCATCTCTGCAATGAATCCAAGAACCCCAATTGTGTAGAGTCATTCCCCAAAGTTGATCTTAGAAACCGCCCAAGTATTGCACCACTCTATTTGTCCTTCGATTTCTTTTGGAAATATTGCCCCTTGAGCATTATGTCCATTGATTTCTCCAACAATTCTATGAAGGGTGGTTTTCCAACCGAAGTTTTCTATTGCACCCAAATCCAGTCTCTTGATCTGAGTCTCAATGCATTTTCTGGGGACATCCCAATTCAAAGTTTCTCTTCCTTGACCAACCTCACTTCTCTCAACCTCTCCTATAATTGTTTTTCAGAGAGTAAACTGTCTGATTCCCAATTCTTCAAAAGGTTCAATTCTTCTAGTTTTCTTCATTCTGGTGCTCTCTTGGATCCAAAAAAGTTTACTGCGAAGGCTGTTGTTCTGTTAGTTTGCCTTCCCATCCTCGTCATTTTTATGGTAATTTCCTTGGTATGGCTTTGTTTCCAAAGGCCTGATTTTCTCCCGAGTAAACTTCAAAGAGGTAGGACGTTTACACCAGCAATTCTAAAGGCAGCAACTGAAGGTTTTTCGGATAAGAATCTGGTGGGGATGAGTGATGTTGTTCACATCTACAAAGGGATGTTGAGAGATGGTACTGAAGTGAAAATTGAGATGTACTGGGATGATATACCAAGGGATAGTTACCGTAGATTTGTTGAGGAATGCAAGATTCTGTCAAAGTTACACCACAAAAACCTTGTCAGAGTTCTGGGGTGGTGTAAGAGCAGAAAATTCAGGGCCCTTATAACAGAATGGACAAGAGAAGAAAATGTTGAAATGTGGTTATCAGGGTCAGGTCCACCATGGAATCATAGAGTGAAAGTGTTAATGGGGATTGTACAATGCATGCGTTATATGCAGAAGGAATGGCCTGAAATTGACTATGAACTCGACACAAGTAGTATTTTGCTGTCCGATAATACGGAACCATTAATTTCAAGGTTCAAAGTTGGAGATCACAACAACAATGAAACAAAGATACATAAGTTTGGAGTATTTGTGCTGGAGATGATACTAGATAAGAAGTTTGATGGAGGTGATGCTGAATTTGTTAGGTACATGAGAACCCTTAATCCTGCAGATTTGGTGCAGATGATTGATGAGAGAATAGAAGTAACTGAAGCTAATTTTTATCAAGTTAAGCAGGCACTGTCTCTAGGATTAATGTGCGTAGATCAATCGAACAATGAGAAGCCAAGCTTGAGCATGATACTTAACACTGTAGCAAGAGCCTACAAAACGTGCCTGTTCAAACCAATTAAGTAG 1533 0.3986 MATISSTWYVFLPIILSLFPTTMCATVLQDLKNLHQPPGFNSTILSNCLNNPSLRYCSSSPMMDFDEIFKFTIVASHLCNESKNPNCVESFPKVDLRNRPSIAPLYLSFDFFWKYCPLSIMSIDFSNNSMKGGFPTEVFYCTQIQSLDLSLNAFSGDIPIQSFSSLTNLTSLNLSYNCFSESKLSDSQFFKRFNSSSFLHSGALLDPKKFTAKAVVLLVCLPILVIFMVISLVWLCFQRPDFLPSKLQRGRTFTPAILKAATEGFSDKNLVGMSDVVHIYKGMLRDGTEVKIEMYWDDIPRDSYRRFVEECKILSKLHHKNLVRVLGWCKSRKFRALITEWTREENVEMWLSGSGPPWNHRVKVLMGIVQCMRYMQKEWPEIDYELDTSSILLSDNTEPLISRFKVGDHNNNETKIHKFGVFVLEMILDKKFDGGDAEFVRYMRTLNPADLVQMIDERIEVTEANFYQVKQALSLGLMCVDQSNNEKPSLSMILNTVARAYKTCLFKPIK 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium440g00007 510 Gene3D Phosphorylase Kinase; domain 1 241 341 - -
Vium440g00007 510 ProSiteProfiles Protein kinase domain profile. 265 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium440g00007 510 Gene3D Ribonuclease Inhibitor 40 210 IPR032675 -
Vium440g00007 510 Pfam Protein tyrosine and serine/threonine kinase 277 405 IPR001245 GO:0004672|GO:0006468
Vium440g00007 510 SUPERFAMILY L domain-like 82 190 - -
Vium440g00007 510 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 108 192 - -
Vium440g00007 510 SUPERFAMILY Protein kinase-like (PK-like) 244 497 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium440g00007 Vium-Chr440 65999 67702 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium440g00007 90 404 Receptor kinase-like Gene Family AT5G46330 27.559 2.91e-25 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vium440g00007 PK_Tyr_Ser-Thr 4.9e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium440g00007 - - gmx:100779045 871.307