Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium440g00003 ATGTTTGTCTCTCTCTTGTTATGTAGGGGTTACTATAGATGCAGCAGCTCAAAGGGTTGTCCTGCAAGAAAACAAGTTGAGAGAAGCAGAACAGATCCAAACCTGTTGGTCATTACTTACACGTCAGAGCACAACCATCCATGGCCAACTCACAGAAATGCTCTAGCTGGGTCTTCTCGATCTCAACCTTCATCAAAAGGCAACAACTTTGGTGCTTCAAAGAATGAAGAAACCAGTCCCCAAAACAATGAAGAGCAGCACGAGGAGAGCAACAGTGATAGCAATAATGTGAATAACAGTGCTTGTGTTCAGGAAGATGGAGAATTCAGTGACATTGGACTCCCTTATAAGCCAATATCCAATATGAAGAGCTACCAACAACAACAACAGCTTGATCAGGGTTTGTTTGCAGAGTTTGGAGAAATAGAAAAAGCTCACTCATTAAACCTAATGTCTCCACCACAAGGTTTTGATGATCACCAAATGAAATCCAACGCTTTAGATTCATTCCATATCTTTGACTGGAGCGCTGATAACAGCACCGAGTTCCACCTCATTTGA 561 0.4207 MFVSLLLCRGYYRCSSSKGCPARKQVERSRTDPNLLVITYTSEHNHPWPTHRNALAGSSRSQPSSKGNNFGASKNEETSPQNNEEQHEESNSDSNNVNNSACVQEDGEFSDIGLPYKPISNMKSYQQQQQLDQGLFAEFGEIEKAHSLNLMSPPQGFDDHQMKSNALDSFHIFDWSADNSTEFHLI 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium440g00003 186 Gene3D WRKY domain 4 50 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium440g00003 186 Pfam WRKY DNA -binding domain 9 47 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium440g00003 186 SMART WRKY_cls 9 48 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium440g00003 186 SUPERFAMILY WRKY DNA-binding domain 7 49 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium440g00003 186 MobiDBLite consensus disorder prediction 41 79 - -
Vium440g00003 186 ProSiteProfiles WRKY domain profile. 9 49 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium440g00003 186 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 9 148 IPR044810 GO:0003700
Vium440g00003 186 MobiDBLite consensus disorder prediction 41 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium440g00003 Vium-Chr440 17499 18691 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium440g00003 9 151 WRKY Transcription Factor Family AT2G34830 42.424 1.25e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium440g00003 WRKY 2.6e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium440g00003 - - vra:106752855 325.479