Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium440g00002 ATGTGCAACATCCTTGACCCAATTATGGACAACTATCAAGGTGATTTGAGTGACATAATTCGTGCTAGTGGTGCATCATATGGCAGTTGCAGCATGGGAACTTCATCATCTAAAGCTTGTGCTCCTTTTTCTCTCGATCACTGGCAGTTCTCTTCCGTTTTGGAAGGGTTTGATGGTAACTTTGGTGATCCATTCTCAAACACGAGAGATCCCTTTCTACACCAGCTTGAATTGCCTGCTTGCTTTAACAGCACAAGTTCTGCAGAAATTAGCAGTTCTGGGGCATTGGAAGAAGCAACTTTTTTTGGTGGTGGGGTTGCTGCTAGTAGTAGTAGTAGTAGAAACAGTTGTGTTTTGAAAGAAACGATTTTTGAGGATGATGACACGAGAAGGCCTTGTAATAGCATATTGGCGAACATGATTCAGATCTCTCCCCCCAATGATAAGCTACCCATGTCGCCATTGGTGGAATCTTTGTCAAGGGCACTCAAGCCTTCTGGTGTGGTTTTAGGTGATACCATGATTAGTGTGAAGACTTCTGAAGATGATTGCTTGGTGGGTAACAACAACACAAAAGAAATGCAGATCTCACCTCCACGGAATCCATGTCTTAAGAGAAGGAAGAGTCTGGCAAAGAAATCTATTTGTGTGCCTGCACCAGCTGCACCGAATAGCAGACAGAGTGGCGAGGTAGTCCCTTCTGATCTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGATCTCCATATCCAAGGGGTTACTATAGATGCAGCAGCTCAAAGGGTTGTCCTGCAAGAAAACAAGTTGAGAGAAGCAGAACAGATCCAAACCTGTTGGTCATTACTTACACGTCAGAGCACAACCATCCATGGCCAACTCACAGAAATGCTCTAGCTGGGTCTTCTCGATCTCAACCTTCATCAAAAGGCAACAACTTTGGTGCTTCAAAGAATGAAGAAACCAGTCCCCAAAACAATGAAGAGCAGCACGAGGAGAGCAACAGTGATAGCAATAATGTGAATAACAGTGCTTGTGTTCAGGAAGATGGAGAATTCAGTGACATTGGACTCCCTTATAAGCCAATATCCAATATGAAGAGCTACCAACAACAACAACAGCTTGATCAGGGTTTGTTTGCAGAGTTTGGAGAAATAGAAAAAGCTCACTCATTAAACCTAATGTCTCCACCACAAGGTTTTGATGATCACCAAATGAAATCCAACGCTTTAGATTCATTCCATATCTTTGACTGGAGCGCTGATAACAGCACCGAGTTCCACCTCATTTGA 1296 0.4336 MCNILDPIMDNYQGDLSDIIRASGASYGSCSMGTSSSKACAPFSLDHWQFSSVLEGFDGNFGDPFSNTRDPFLHQLELPACFNSTSSAEISSSGALEEATFFGGGVAASSSSSRNSCVLKETIFEDDDTRRPCNSILANMIQISPPNDKLPMSPLVESLSRALKPSGVVLGDTMISVKTSEDDCLVGNNNTKEMQISPPRNPCLKRRKSLAKKSICVPAPAAPNSRQSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRTDPNLLVITYTSEHNHPWPTHRNALAGSSRSQPSSKGNNFGASKNEETSPQNNEEQHEESNSDSNNVNNSACVQEDGEFSDIGLPYKPISNMKSYQQQQQLDQGLFAEFGEIEKAHSLNLMSPPQGFDDHQMKSNALDSFHIFDWSADNSTEFHLI 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium440g00002 431 SMART WRKY_cls 233 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium440g00002 431 FunFam probable WRKY transcription factor 14 207 287 - -
Vium440g00002 431 SUPERFAMILY WRKY DNA-binding domain 231 294 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium440g00002 431 ProSiteProfiles WRKY domain profile. 228 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium440g00002 431 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 15 392 IPR044810 GO:0003700
Vium440g00002 431 MobiDBLite consensus disorder prediction 286 346 - -
Vium440g00002 431 Gene3D WRKY domain 222 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium440g00002 431 Pfam WRKY DNA -binding domain 235 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium440g00002 431 MobiDBLite consensus disorder prediction 286 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium440g00002 Vium-Chr440 12392 16456 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium440g00002 1 409 WRKY Transcription Factor Family AT2G34830 40.308 1.12e-76 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium440g00002 WRKY 2.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium440g00002 - - vra:106752855 789.645