Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4404g00005 ATGCAAACCTTTGAACAAAATTTCACCTTTTGCATCCCAAACTCTTCACTTTCATCACACTCTGATATCTCTATCACTGATTACTTGCTTCCCCAAGATCTTCAATTTCAAGTTCATACCACCCCTCAAATGCCTCAACTCACATCTTCCTCCAAGCCTCCAAGATCCTCTAATCTAAGCAACCGCAAACCCTCTTTGAAAAACATCACAATCCCTTCTATAACTTCAGGTCTTGTGATGCCACACCACATGGAAACGACATCATCAACAACATCAACAACATCAGGTACAACCGTTTATGACAGCAGCAATCAAGTTTCTTCTTTGGATGATGGCAACAATAGTAGAGAGGATAAGCACTACAGAGGGGTCAGGAGAAGGCCGTGGGGGAAGTTTGCTGCAGAAATTCGGGACCCCAATAGAAAAGGGTCGAGGGTGTGGCTTGGAACCTTTGACACAGCCATAGAAGCTGCTAAGGCTTATGACAGAGCTGCTTTCAGGATGAGAGGGAGCAAAGCCATATTGAACTTCCCTTTGGAGGTTGGAGAATCTGAAGAAGAATCGGTTTCGATCAAGGTTGGTTTGAAGAGAGAAAGAGAGGAAGAAAGTGAAGGGAAGAAGGAAAGTAACAAGCTTGTGAAGAAAGAAGAGTGCTCTCCCAAAGGGGTGTGCCCTTTGACTCCATCATGTTGGAAAGGCTTTTGGGACACTGATGTTATGGGAACCATCTTTAGTGTTCCTCCTTTGTCTCCATTATCTCCACTGATGGTTGTTTGA 777 0.4414 MQTFEQNFTFCIPNSSLSSHSDISITDYLLPQDLQFQVHTTPQMPQLTSSSKPPRSSNLSNRKPSLKNITIPSITSGLVMPHHMETTSSTTSTTSGTTVYDSSNQVSSLDDGNNSREDKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDRAAFRMRGSKAILNFPLEVGESEEESVSIKVGLKREREEESEGKKESNKLVKKEECSPKGVCPLTPSCWKGFWDTDVMGTIFSVPPLSPLSPLMVV 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4404g00005 258 SMART rav1_2 120 184 IPR001471 GO:0003700|GO:0006355
Vium4404g00005 258 FunFam Ethylene-responsive transcription factor 2 119 180 - -
Vium4404g00005 258 SUPERFAMILY DNA-binding domain 120 180 IPR016177 GO:0003677
Vium4404g00005 258 Gene3D AP2/ERF domain 119 180 IPR036955 GO:0003700|GO:0006355
Vium4404g00005 258 MobiDBLite consensus disorder prediction 42 111 - -
Vium4404g00005 258 CDD AP2 119 178 IPR001471 GO:0003700|GO:0006355
Vium4404g00005 258 MobiDBLite consensus disorder prediction 42 122 - -
Vium4404g00005 258 PANTHER DNA-BINDING DOMAIN 82 206 IPR044808 GO:0003700|GO:0009873
Vium4404g00005 258 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Vium4404g00005 258 PRINTS Ethylene responsive element binding protein signature 160 180 IPR001471 GO:0003700|GO:0006355
Vium4404g00005 258 ProSiteProfiles AP2/ERF domain profile. 120 178 IPR001471 GO:0003700|GO:0006355
Vium4404g00005 258 Pfam AP2 domain 120 170 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4404g00005 Vium-Chr4404 36615 38019 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4404g00005 117 255 AP2-EREBP Transcription Factor Family AT5G51190 60.135 3.21e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium4404g00005 AP2 4.7e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4404g00005 K09286 - gmx:100795866 295.049