Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4404g00004 ATGCCAGGCATTCCTGTTGCCGCTCGTGCAACCTCAAGCCTCCATGATGCTTGTGAACATTTATCTGCGGAAGAGGAGCTTGCAGCTGAAGAGAGTCTTTCAATTTATTGCAAGCCCGTAGAATTTTACAATATTCTCCAGCGACGTGCCATGAGAAATCCATTATTTCTTCAGAGATGTTTGCACTACCAGATAAAGGAAAAACACAAGAAAAGAATACAAATGACAGTTTCCTTGATGCGGACTATTACGGAAAGTCAAAATGTGTTTCCCATGTCTATATGTCTCGCAAGGCGGGTTTCTGATCATGGATCTTCAAGGCAATCTGCCATGTATCGAATCGGTCGAATGTTCATCTTTCGAAACTCCCCTGGAATTGATTTAAATACTCAAGTCCAAGCAAATTTTACTCTTCCTGAAGTCAACAAGTTAGCTGATGAAGCTAGATCTTGCTCACTTGATATCTTGTTTGTCAGCACTGCCACTGTGAAAAACTCGAATTTATCATCTGGAGTCAATTCAAACTCCATGCCTTCGGATACAAATCATCTAGCTTTTTTTGAATCTGGAGAGTACTGCCTTTGGGGGAAAGTGTCTTTAGAATCACTTTATATGGCTTGGGATTGTTTTCCGAATTTTCGTTTGGGACAGCGAGCAGAGATTATGTCAACTGTTGATTTGCTTCCATGTATTCTGAAGTCAGATTTTAAAAACGACTACACAAGAGTGTCTATTCAAGTTCCTTCTAATTTCGAGAATATGAGTGCATCAAAACAAGTACAAATCACAATTTCTGCGGAAGAGTTTGGGGCCAAAGAAAAATCTCCCTGTATTTCATACACAGGCAGTGAAGTACCGTCCTCATCATTGTCTCACTTGATTGGATTGAGGGAAGGAAATGTCATGTTTAATTACAGGTATTACAATAATAAGTTACAGAGGACAGAAGTCACCGAAGATTTCACTTGTCCATTCTGTTTGGTTAAATGTTCTAGTTTTAAGGGTCTAAGATGTCATTTGTCCTCGTCACATGATCTCTTCAACTTTGAATTTTGGGTATCGGATGAGTGTCATGCTGTAAATGTGACTGTGAAGAATGATATCTCGAGATCAGAGATTGTTGCTGATACTGTTGATCCAAGAGTGCAAACATTTTTCTATTGTGGAAAGCCCCTTAAGCGTAGGACACCAAAGGACCCATCTTCTAAAAATGCAGTAGGCTTAGAGTCTGCCTTTCCTGCAGGAGAGACTGATATTTTGGAGAAGGATGATGGAATTTCTGCCACAATTATTAGATCACATCCTGATCGAGACTCTGTCCAGTCAATATCAGACTGTGATCAATCAGTGCTCCAGTTTGCCAAGACTAGGAAGTTGTCAATTGAGTGTTCTGACTCACGAAACAGTGCCCTATTAAGGAAACGACAGTTTTTTCATTCTCACAAAGCTCAGCCAATGACAATTGAACAAGTTCTATCAGATAAAGACAGCGAAGATGAAGTCGATGACGATGTTGCTGATTTTGAAGATAGAAGGATGCTTGAAAATTTTGTTGACGTGAGCAAGGATGAGAAGAATTTCATGCACATGTGGAACTCGTTTGTTCGGAAGCATCGTGTGATTGCAGATGGTCACATTTCATGGGCATGTGAGGCTTTCTCGAAATTGCATGCAGCTGAGTTTGTTCGGTCACGCTCACTGGCCGGTTGTTGGAGAATATTTATGGTCAAGCTGTACAATCATGGTCTGCTGGATGCTCGAACCATGAATGACTGTAATGTTATTCTTGAGCAACAGCATAAGCAGAATTCAGACCCCATTAGCTAA 1827 0.4061 MPGIPVAARATSSLHDACEHLSAEEELAAEESLSIYCKPVEFYNILQRRAMRNPLFLQRCLHYQIKEKHKKRIQMTVSLMRTITESQNVFPMSICLARRVSDHGSSRQSAMYRIGRMFIFRNSPGIDLNTQVQANFTLPEVNKLADEARSCSLDILFVSTATVKNSNLSSGVNSNSMPSDTNHLAFFESGEYCLWGKVSLESLYMAWDCFPNFRLGQRAEIMSTVDLLPCILKSDFKNDYTRVSIQVPSNFENMSASKQVQITISAEEFGAKEKSPCISYTGSEVPSSSLSHLIGLREGNVMFNYRYYNNKLQRTEVTEDFTCPFCLVKCSSFKGLRCHLSSSHDLFNFEFWVSDECHAVNVTVKNDISRSEIVADTVDPRVQTFFYCGKPLKRRTPKDPSSKNAVGLESAFPAGETDILEKDDGISATIIRSHPDRDSVQSISDCDQSVLQFAKTRKLSIECSDSRNSALLRKRQFFHSHKAQPMTIEQVLSDKDSEDEVDDDVADFEDRRMLENFVDVSKDEKNFMHMWNSFVRKHRVIADGHISWACEAFSKLHAAEFVRSRSLAGCWRIFMVKLYNHGLLDARTMNDCNVILEQQHKQNSDPIS 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4404g00004 608 Pfam VEFS-Box of polycomb protein 459 594 IPR019135 -
Vium4404g00004 608 CDD VEFS-box_EMF2-like 472 599 - -
Vium4404g00004 608 CDD ZnB-Zn_EMF2-like 290 368 - -
Vium4404g00004 608 PANTHER POLYCOMB GROUP PROTEIN 20 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4404g00004 Vium-Chr4404 5858 34633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4404g00004 1 598 C2H2 Transcription Factor Family AT5G51230 53.785 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4404g00004 - - gmx:100798991 1077