LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium4404g00003	ATGCCAGGCATTCCTGTTGCCGCTCGTGCAACCTCAAGCCTCCATGATGCTTGTGAACATTTATCTGCGGAAGAGGAGCTTGCAGCTGAAGAGAGTCTTTCAATTTATTGCAAGCCCGTAGAATTTTACAATATTCTCCAGCGACGTGCCATGAGAAATCCATTATTTCTTCAGAGATGTTTGCACTACCAGATAAAGGAAAAACACAAGAAAAGAATACAAATGACAGTTTCCTTGATGCGGACTATTACGGAAAGTCAAAATGTGTTTCCCATGTCTATATGTCTCGCAAGGCGGGTTTCTGATCATGGATCTTCAAGGCAATCTGCCATGTATCGAATCGGTCGAATGTTCATCTTTCGAAACTCCCCTGGAATTGATTTAAATACTCAAGTCCAAGCAAATTTTACTCTTCCTGAAGTCAACAAGTTAGCTGATGAAGCTAGATCTTGCTCACTTGATATCTTGTTTGTCAGCACTGCCACTGCTGGAGAGTACTGCCTTTGGGGGAAAGTGTCTTTAGAATCACTTTATATGGCTTGGGATTGTTTTCCGAATTTTCGTTTGGGACAGCGAGCAGAGATTATGTCAACTGTTGATTTGCTTCCATGTATTCTGAAGTCAGATTTTAAAAACGACTACACAAGAGTGTCTATTCAAGTTCCTTCTAATTTCGAGAATATGAGTGCATCAAAACAAGTACAAATCACAATTTCTGCGGAAGAGTTTGGGGCCAAAGAAAAATCTCCCTGTATTTCATACACAGGCAGTGAAGTACCGTCCTCATCATTGTCTCACTTGATTGGATTGAGGGAAGGAAATGTCATGTTTAATTACAGGTATTACAATAATAAGTTACAGAGGACAGAAGTCACCGAAGATTTCACTTGTCCATTCTGTTTGGTTAAATGTTCTAGTTTTAAGGGTCTAAGATGTCATTTGTCCTCGTCACATGATCTCTTCAACTTTGAATTTTGGGTATCGGATGAGTGTCATGCTGTAAATGTGACTGTGAAGAATGATATCTCGAGATCAGAGATTGTTGCTGATACTGTTGATCCAAGAGTGCAAACATTTTTCTATTGTGGAAAGCCCCTTAAGCGTAGGACACCAAAGGACCCATCTTCTAAAAATGCAGTAGGCTTAGAGTCTGCCTTTCCTGCAGGAGAGACTGATATTTTGGAGAAGGATGATGGAATTTCTGCCACAATTATTAGATCACATCCTGATCGAGACTCTGTCCAGTCAATATCAGACTGTGATCAATCAGTGCTCCAGTTTGCCAAGACTAGGAAGTTGTCAATTGAGTGTTCTGACTCACGAAACAGTGCCCTATTAAGGAAACGACAGTTTTTTCATTCTCACAAAGCTCAGCCAATGACAATTGAACAAGTTCTATCAGATAAAGACAGCGAAGATGAAGTCGATGACGATGTTGCTGATTTTGAAGATAGAAGGATGCTTGAAAATTTTGTTGACGTGAGCAAGGATGAGAAGAATTTCATGCACATGTGGAACTCGTTTGTTCGGAAGCATCGTGTGATTGCAGATGGTCACATTTCATGGGCATGTGAGGCTTTCTCGAAATTGCATGCAGCTGAGTTTGTTCGGTCACGCTCACTGGCCGGTTGTTGGAGAATATTTATGGTCAAGCTGTACAATCATGGTCTGCTGGATGCTCGAACCATGAATGACTGTAATGTTATTCTTGAGCAACAGCATAAGCAGAATTCAGACCCCATTAGCTAA	1749	0.4094	MPGIPVAARATSSLHDACEHLSAEEELAAEESLSIYCKPVEFYNILQRRAMRNPLFLQRCLHYQIKEKHKKRIQMTVSLMRTITESQNVFPMSICLARRVSDHGSSRQSAMYRIGRMFIFRNSPGIDLNTQVQANFTLPEVNKLADEARSCSLDILFVSTATAGEYCLWGKVSLESLYMAWDCFPNFRLGQRAEIMSTVDLLPCILKSDFKNDYTRVSIQVPSNFENMSASKQVQITISAEEFGAKEKSPCISYTGSEVPSSSLSHLIGLREGNVMFNYRYYNNKLQRTEVTEDFTCPFCLVKCSSFKGLRCHLSSSHDLFNFEFWVSDECHAVNVTVKNDISRSEIVADTVDPRVQTFFYCGKPLKRRTPKDPSSKNAVGLESAFPAGETDILEKDDGISATIIRSHPDRDSVQSISDCDQSVLQFAKTRKLSIECSDSRNSALLRKRQFFHSHKAQPMTIEQVLSDKDSEDEVDDDVADFEDRRMLENFVDVSKDEKNFMHMWNSFVRKHRVIADGHISWACEAFSKLHAAEFVRSRSLAGCWRIFMVKLYNHGLLDARTMNDCNVILEQQHKQNSDPIS	582

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium4404g00003	582	CDD	ZnB-Zn_EMF2-like	264	342	-	-
	Vium4404g00003	582	Pfam	VEFS-Box of polycomb protein	433	568	IPR019135	-
	Vium4404g00003	582	PANTHER	POLYCOMB GROUP PROTEIN	20	579	-	-
	Vium4404g00003	582	CDD	VEFS-box_EMF2-like	446	573	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium4404g00003	Vium-Chr4404	5858	34633	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium4404g00003	1	572	C2H2 Transcription Factor Family	AT5G51230	53.920	0.0	599