Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4402g00001 ATGCGGTGTAATGGTTTAACCGTACACGGAAGCAACCACCGTGGCTTCTGCGTCCCCACCGTGTCTCCGGTGTTCTTGAGACCCACCCGACCCGTCACCCGTATCGCGTTTCCTAAGGCTAGCCTGAAGAACGAGGGACTAGTGATGGAGTTAAGCTTCTACGAGCTTCTGGGTATACCCGAATCCGGTTCCTTGATGGAGATCAAGAACGCGTACAAGCAACTCGCCCGAAAGTACCACCCGGATGTGTCTCCTCCGGGTCGGGTGGAGGAATACACCAAACGGTTTATTCAGGTGCAGGAAGCCTACGAAACTCTCTCCGATCCTTCCCGAAGAGCCATGTACGATCACGACATGGCTAAAGGTATTAACTTCGCTTTCAACGCCCGCAGACGCCGCAATTACCACGATCAGGTGGTGGAACAAAAAACTGAATGGAAATCTCGGTGGCAATCTCAACTGTCGGAGCTGAAGAGAAGAAGTAACAGCAAGGAGGGTGGAGGGAATATGTCATGGGCAGCGAGAATGCGCCAGCAGAGGGATGAATTGGCTAATGAATCATGA 564 0.5248 MRCNGLTVHGSNHRGFCVPTVSPVFLRPTRPVTRIAFPKASLKNEGLVMELSFYELLGIPESGSLMEIKNAYKQLARKYHPDVSPPGRVEEYTKRFIQVQEAYETLSDPSRRAMYDHDMAKGINFAFNARRRRNYHDQVVEQKTEWKSRWQSQLSELKRRSNSKEGGGNMSWAARMRQQRDELANES 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4402g00001 187 ProSitePatterns Nt-dnaJ domain signature. 96 115 IPR018253 -
Vium4402g00001 187 ProSiteProfiles dnaJ domain profile. 52 119 IPR001623 -
Vium4402g00001 187 FunFam Chaperone protein dnaJ 20, chloroplastic 41 148 - -
Vium4402g00001 187 CDD DnaJ 53 108 IPR001623 -
Vium4402g00001 187 PRINTS DnaJ domain signature 54 72 IPR001623 -
Vium4402g00001 187 PRINTS DnaJ domain signature 72 87 IPR001623 -
Vium4402g00001 187 PRINTS DnaJ domain signature 91 111 IPR001623 -
Vium4402g00001 187 Pfam DnaJ domain 53 116 IPR001623 -
Vium4402g00001 187 SUPERFAMILY Chaperone J-domain 51 123 IPR036869 -
Vium4402g00001 187 SMART dnaj_3 51 111 IPR001623 -
Vium4402g00001 187 Gene3D DnaJ domain 39 163 IPR036869 -
Vium4402g00001 187 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 49 182 - -
Vium4402g00001 187 MobiDBLite consensus disorder prediction 148 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4402g00001 Vium-Chr4402 4520 7096 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4402g00001 54 116 C2H2 Transcription Factor Family AT1G74250 45.455 7.35e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4402g00001 - - gmx:100101903 317.39