Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4400g00001 ATGTACGCCGGTGACAGCGACAGCAACAGCGATAGCGGAGAGCGGGTACGGCGCGGGGAGACGCTGGAATTCCAGAACCTGAATGTGGTGTCGGCTGTGGGACGCGGCGCGAAGGGCGTGGTGTTCCTGGCGCGGGTGGTTGAGAAGGGAAACGGAGAATGGTTGGCGCTGAAGGTGGTGTCGAAGGAGCTGCTGAGGAAGAAGAACAGGAACGAGGGAAGGTGCAAGAGGGTATCGTTCGAGAGGCACATACTACGTCGTTTCGATCACCCGCTATTGCCCAGGTTCCGAGGCGCTCTCGACACCGACCAACTCACCGGTTTCGCAATCGATTATTGCCACGGCGGAAACCTCCATTTGCTTCGGAAGAAGCAACCGGAGAAGACCTTCTCTGAAGACACCGTAAGGTTTTATGCAGTAGAATTGGTTCTAGCGTTGGAGTATTTGCACAACTTAGGAGTAGTTTATAGAGATTTAAAGCCAGAGAATATCATGATCCAAGAATCAGGTCACATAATGTTAGTGGATTTTGACCTTTCCAAGAAGTTATACCTTCGCTCAACTCCATCGTCGAGTTGCAACTCATCACCGGGCTCTGACTCGTCACCGGAGAAAGATCGGAGGAAGCGACGACTATCACGATTCAGCTGTTACTGCCATTCAGGGATATCCTTGTACGACTCAGATATTCCGAATCAACTCAACGCCATCCCAACGAGTCGCAGCATGTCAGACTCAGTGGAAAAGTCGAACTCCTTTGTCGGAACGGAAGAGTACGTGGCACCGGAGGTCATCTCTGGAGAAGGACACGACTTCGCCGTTGATTGGTGGTCATTGGGCATTGTTCTGCACGAGTTGATGTACGGAACAACGCCGTTTAAGGGCGCGAATAGGAAAGAAACGTTTCATCGTATCATAACGAAGGAACCCGAATTATCAGGTGCAACAACGCCTTTGAGGGACTTGATTAAAAAGTTGCTTGAGAAGGATCCGGAGCGTAGGATCCAGGTGAAAGATATCAAGAGCCACGATTTCTTCAAAGGCGTGAAGTGGGACACGATCTTGGAAATCTCACGTCCACCGTATATTCCTCAAAATGAGATAAAGGATTCAACAGGGTTTTCTCAAAAGGATGTAGAGTCGTTTGTTCATAGAATATTTTTTCCCAAGAGTAAAGAGGAGGAAGATAAAACAAATAAAGGGGAGGCAAAAAGGAATGAAAAGGAAACCCCGAAGGAGGAAAATTATAAAAATGAGGAAAACGATAAAAAGGAGGAAAATAATAAAAATGTGTGGGTTGACAAGTTAAATCAAAATTCTGCTAAGGATGAGAATTTTTTAATTTTTTGA 1350 0.4711 MYAGDSDSNSDSGERVRRGETLEFQNLNVVSAVGRGAKGVVFLARVVEKGNGEWLALKVVSKELLRKKNRNEGRCKRVSFERHILRRFDHPLLPRFRGALDTDQLTGFAIDYCHGGNLHLLRKKQPEKTFSEDTVRFYAVELVLALEYLHNLGVVYRDLKPENIMIQESGHIMLVDFDLSKKLYLRSTPSSSCNSSPGSDSSPEKDRRKRRLSRFSCYCHSGISLYDSDIPNQLNAIPTSRSMSDSVEKSNSFVGTEEYVAPEVISGEGHDFAVDWWSLGIVLHELMYGTTPFKGANRKETFHRIITKEPELSGATTPLRDLIKKLLEKDPERRIQVKDIKSHDFFKGVKWDTILEISRPPYIPQNEIKDSTGFSQKDVESFVHRIFFPKSKEEEDKTNKGEAKRNEKETPKEENYKNEENDKKEENNKNVWVDKLNQNSAKDENFLIF 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4400g00001 449 FunFam Serine/threonine-protein kinase OXI1 248 365 - -
Vium4400g00001 449 Gene3D Phosphorylase Kinase; domain 1 366 375 - -
Vium4400g00001 449 SUPERFAMILY Protein kinase-like (PK-like) 26 377 IPR011009 -
Vium4400g00001 449 FunFam Serine/threonine-protein kinase OXI1 117 184 - -
Vium4400g00001 449 ProSiteProfiles AGC-kinase C-terminal domain profile. 347 449 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium4400g00001 449 PANTHER FLIPPASE KINASE 1-RELATED 10 370 - -
Vium4400g00001 449 MobiDBLite consensus disorder prediction 393 436 - -
Vium4400g00001 449 MobiDBLite consensus disorder prediction 393 431 - -
Vium4400g00001 449 Gene3D Transferase(Phosphotransferase) domain 1 247 365 - -
Vium4400g00001 449 SMART serkin_6 27 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4400g00001 449 Gene3D Transferase(Phosphotransferase) domain 1 117 193 - -
Vium4400g00001 449 Gene3D Phosphorylase Kinase; domain 1 27 116 - -
Vium4400g00001 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Vium4400g00001 449 Pfam Protein kinase domain 246 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4400g00001 449 Pfam Protein kinase domain 29 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4400g00001 449 ProSiteProfiles Protein kinase domain profile. 27 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4400g00001 449 MobiDBLite consensus disorder prediction 187 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4400g00001 Vium-Chr4400 7479 9628 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4400g00001 17 449 AGC Kinase Gene Family AT3G25250 51.584 2.83e-147 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium4400g00001 Pkinase 1.8e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4400g00001 K20714 - gmx:100813693 651.744