LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium43g00005	ATGATGGAACACAACATCATTAGCAACACCAACAACGTGATCGCACCGTTTGTCATAAAAACCTACAACATGGTTAACGATCCCGCCACCGATAATCTCATCACGTGGGGCCCAGCCAACAACAGTTTCATCGTCCTCGACCCTCTCGACTTCTCTCACTCACTCCTCCCTGCTTTCTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTACGGTTTCAGAAAGGTGGATCCGGATCGGTGGGAATTCGCGAACGAGTGGTTCCTGCGGGGGCAGAAGCATTTGTTGAGGAACATCGTGCGGCGGAAGCATGGCGGAGGTAGGAGCAGTAATTTGCATTTGCATACCCTGAAGCTGGAAGAGTTGGACGACGAGGCCATGGTGATGGAGATAGCGAAGCTGAAGGAGGAGCAGAAGGCGTTGGAGGAAGAGCTTCAAGGAATGAACAAGAGGTTAGAGACAACGGAAAAACGACCGCAGCAAATGATGGCGTTTCTGTCAAAGGTTGTCGAGGACCCGCAGGTTCTCTCTCGGATTCTCCGAGAAAGAGAAAGAAAACACCTCAGCGAGAAAAAGCGACGCCTAATTCCTCCGCCTTCGACCGCGGCGACCTCCTCCTCCTCCTCATCCGGCATCAAGACGGAGTTCGAAGAGGACGAGGGTAACAACATCATGTCTTCATCGCCGGAGACAGGTTTGGAAATCGATAATAATAATAATAATAATATTTTATATTCGTCGGCGACGGCGGGGTATTGGGGGGAACAGGGATGTTATGGGTATAATTGCGGCGGAGTAACGACGCCGTTAACGGTGGTGACACCGGCGGCGCCGGCGATGGGAGGAGGGTATTTGGGGCGTGGGAGTTATTTTGGGGAAATGGCGGCGGAGGGGAGTGCTCTGCCGCCTTATCCGTTTTCGTTGTTGGAAGGTGGGTTTTAG	954	0.522	MMEHNIISNTNNVIAPFVIKTYNMVNDPATDNLITWGPANNSFIVLDPLDFSHSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLRNIVRRKHGGGRSSNLHLHTLKLEELDDEAMVMEIAKLKEEQKALEEELQGMNKRLETTEKRPQQMMAFLSKVVEDPQVLSRILRERERKHLSEKKRRLIPPPSTAATSSSSSSGIKTEFEEDEGNNIMSSSPETGLEIDNNNNNNILYSSATAGYWGEQGCYGYNCGGVTTPLTVVTPAAPAMGGGYLGRGSYFGEMAAEGSALPPYPFSLLEGGF	317

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium43g00005	317	Gene3D	-	9	107	IPR036388	-
	Vium43g00005	317	PRINTS	Heat shock factor (HSF) domain signature	68	80	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium43g00005	317	PRINTS	Heat shock factor (HSF) domain signature	55	67	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium43g00005	317	PRINTS	Heat shock factor (HSF) domain signature	17	40	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium43g00005	317	Pfam	HSF-type DNA-binding	17	106	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium43g00005	317	SMART	hsfneu3	13	106	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium43g00005	317	Coils	Coil	123	162	-	-
	Vium43g00005	317	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	13	229	IPR027725	-
	Vium43g00005	317	MobiDBLite	consensus disorder prediction	191	239	-	-
	Vium43g00005	317	ProSitePatterns	HSF-type DNA-binding domain signature.	56	80	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium43g00005	317	MobiDBLite	consensus disorder prediction	225	239	-	-
	Vium43g00005	317	FunFam	Heat shock transcription factor 1	10	107	-	-
	Vium43g00005	317	SUPERFAMILY	"Winged helix" DNA-binding domain	14	106	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium43g00005	Vium-Chr43	38111	39824	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium43g00005	13	317	HSF	AT3G24520	46.450	1.26e-87	264

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vium43g00005		HSF_DNA-bind	4.5e-30	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium43g00005	K09419		-	gmx:100794896	514.998