Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium43g00004 ATGCCGCGATCCAATTCCGCCGCGCACCACCACCGTCAGAGCTCCGACAACTTCATCCTCGACGCTCATAGAAGCTGGTTACAGTCTTCGACTTTCGCGCAGGAGTTCGGGACTCGATCTTCGAGCTTGAGGAAAATAGACGATGATCGTGCTTTGAGCAGCGGCTTGCTTGATCTGCATTCCTTAGATACCGAGCTTTTACCTGAGACTTATGGTGATCACAATGGATACTTCACTAATTACACTGTTCGGGGACAGAGTTTTGATGACTATGAGTCAATCCTCTCTGGTAACAAACATGTACAAAGGTCTCGGGGATTGCCTGAGAACAATTTTCTGAAAAGTGTCCCAACAGAAAAGGAGAGAGCAAACAATGTTGCCAAGATTAAAGTAGCGGTCCGGAAGAGACCCCTTAATAAGAAGGAAATAGCAAAGAGAGAAGAAGACATTATTTCTATAGATTCAAATTTTCTCACAGTGCATGAAAGAAAACTCAAGGTGGACTTAACAGAATATGTTGAGAAACATGAATTTGTCTTTGATGCTGTGCTGAACGAAGATGTTTCAAATAATGAAGTATATGCCGAGACTGTGGAGCCAATTGTTCCGCTCATTTTCCAGCGAATAAAAGCAACTTGCTTTGCATACGGTCAAACTGGCAGTGGGAAGACATATACTATGCAACCATTGCCTCTCAAAGCTTCACAAGATATTTTAAGATTAATGCACCACACCTACTGGAATCAAGGTTTCCAATTGTTTGTTAGTTTCTTTGAAATATATGGGGGAAAACTTTTTGATCTCCTCAATGATCGAAAAAAACTTTTCATGAGGGAGGATGGGAAACAACAGGTTTGCATTGTTGGCTTGCAAGAATATAGAGTATCTAAAGTAGAGACAATCAAGGAATTTATTGAGAAAGGAAATGCCACAAGAAGTACTGGCACAACTGGAGCAAATGAGGAATCCTCTCGATCACATGCTATACTTCAGCTTTGCATTAAGAGATCAGCTGATGGGACTGAATCAAAGCCTGCTCGACTTGTGGGCAAACTATCTTTTATAGATCTGGCTGGAAGTGAACGAGGTGCAGATACTACAGATAATGACAAGCAGACTAGGATTGAAGGGGCAGAAATAAATAAAAGCTTACTTGCTCTGAAAGAATGCATTAGAGCTTTGGACAATGACCAAGGGCATATCCCTTTCAGAGGAAGTAAATTGACGGAAGTTCTGCGAGATTCCTTTGTTGGTAATTCGCGCACTGTAATGATATCATGCATTTCACCTAGCTCAGGTTCATGCGAGCATACTCTTAACACGTTAAGATATGCTGACAGAGTGAAGAGCCTGTCAAAAGGAAACAACTCTAGAAGGGATCTTCTTTCTTCCTCAAACCTTAGAGAGTCCACTGTGTTGCCTGGGTCTTCAATTTTAGCTCATGATGATACCTTGGAGGATGAAATAACGTATGTCTCCACTGACAGGAATCGATTTGGTTGGCCCAAACATCCAGAAAGAGAACTCTCTCCTCCAAATAATGTGGACCGTGTTCCAAGTGGTAGAATGGGGGGAAATTTGGCGTCATCTGGGTATTCTAATCCACCAAACGGTCCAAGAGGTGGTCAAAATGACAGAACTGCAAATGAATATGATTACATAGGACCCATATATGAACAAGACAGAACAAGAAAAACGATTAAGAGGGTGGATAACAACCACTTATCTGCTTTTGAAGACAAGAAGAGGATAGAGTCTCGTGTTACTGTTGATGCATCAAATTTTCAGACTACTTATTCTGATCCGGATGATAATTTAAATGCCCTCCTGAAGGAAGAGGAAGATCTAGTAACAGCTCATCGTAGACAGGTGGAGGAAACCATAGACATTGTTAGAGAGGAGATGAATTTACTTGTTGAAGCTGACCAACCAGGAAATCAATTGGATGATTATATTTCCAAATTGAATACCATTTTATCACAAAAGGCTACAGGAATCCTTGAATTGCAGACACAGTTGGCTCAATTTCAGAGACGTTTAAACGAGTATAATGTTTTCGTATCTTCTGGTAATTGA 2076 0.4109 MPRSNSAAHHHRQSSDNFILDAHRSWLQSSTFAQEFGTRSSSLRKIDDDRALSSGLLDLHSLDTELLPETYGDHNGYFTNYTVRGQSFDDYESILSGNKHVQRSRGLPENNFLKSVPTEKERANNVAKIKVAVRKRPLNKKEIAKREEDIISIDSNFLTVHERKLKVDLTEYVEKHEFVFDAVLNEDVSNNEVYAETVEPIVPLIFQRIKATCFAYGQTGSGKTYTMQPLPLKASQDILRLMHHTYWNQGFQLFVSFFEIYGGKLFDLLNDRKKLFMREDGKQQVCIVGLQEYRVSKVETIKEFIEKGNATRSTGTTGANEESSRSHAILQLCIKRSADGTESKPARLVGKLSFIDLAGSERGADTTDNDKQTRIEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGSCEHTLNTLRYADRVKSLSKGNNSRRDLLSSSNLRESTVLPGSSILAHDDTLEDEITYVSTDRNRFGWPKHPERELSPPNNVDRVPSGRMGGNLASSGYSNPPNGPRGGQNDRTANEYDYIGPIYEQDRTRKTIKRVDNNHLSAFEDKKRIESRVTVDASNFQTTYSDPDDNLNALLKEEEDLVTAHRRQVEETIDIVREEMNLLVEADQPGNQLDDYISKLNTILSQKATGILELQTQLAQFQRRLNEYNVFVSSGN 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium43g00004 691 FunFam Kinesin-like protein 110 454 - -
Vium43g00004 691 Pfam Kinesin motor domain 134 450 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium43g00004 691 MobiDBLite consensus disorder prediction 496 549 - -
Vium43g00004 691 CDD KISc_KIF2_like 128 449 - -
Vium43g00004 691 Coils Coil 621 641 - -
Vium43g00004 691 PRINTS Kinesin heavy chain signature 317 334 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium43g00004 691 PRINTS Kinesin heavy chain signature 351 369 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium43g00004 691 PRINTS Kinesin heavy chain signature 401 422 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium43g00004 691 PRINTS Kinesin heavy chain signature 208 229 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium43g00004 691 MobiDBLite consensus disorder prediction 526 544 - -
Vium43g00004 691 ProSiteProfiles Kinesin motor domain profile. 128 451 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium43g00004 691 MobiDBLite consensus disorder prediction 496 511 - -
Vium43g00004 691 PANTHER KINESIN-RELATED PROTEIN 6 37 685 IPR027640 GO:0003777|GO:0007018
Vium43g00004 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 451 IPR027417 -
Vium43g00004 691 Gene3D Kinesin motor domain 109 454 IPR036961 -
Vium43g00004 691 ProSitePatterns Kinesin motor domain signature. 350 361 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vium43g00004 691 SMART kinesin_4 126 457 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium43g00004 Vium-Chr43 20407 25858 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium43g00004 127 498 Calmodulin-binding Proteins AT5G65930 32.461 6.45e-44 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium43g00004 K10393 - gmx:100783382 1179.47