Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium43g00003 ATGCCGCGATCCAATTCCGCCGCGCACCACCACCGTCAGAGCTCCGACAACTTCATCCTCGACGCTCATAGAAGCTGGTTACAGTCTTCGACTTTCGCGCAGGAGTTCGGGACTCGATCTTCGAGCTTGAGGAAAATAGACGATGATCGTGCTTTGAGCAGCGGCTTGCTTGATCTGCATTCCTTAGATACCGAGCTTTTACCTGAGAGTTTTGATGACTATGAGTCAATCCTCTCTGGTAACAAACATGTACAAAGGTCTCGGGGATTGCCTGAGAACAATTTTCTGAAAAGTGTCCCAACAGAAAAGGAGAGAGCAAACAATGTTGCCAAGATTAAAGTAGCGGTCCGGAAGAGACCCCTTAATAAGAAGGAAATAGCAAAGAGAGAAGAAGACATTATTTCTATAGATTCAAATTTTCTCACAGTGCATGAAAGAAAACTCAAGGTGGACTTAACAGAATATGTTGAGAAACATGAATTTGTCTTTGATGCTGTGCTGAACGAAGATGTTTCAAATAATGAAGTATATGCCGAGACTGTGGAGCCAATTGTTCCGCTCATTTTCCAGCGAATAAAAGCAACTTGCTTTGCATACGGTCAAACTGGCAGTGGGAAGACATATACTATGCAACCATTGCCTCTCAAAGCTTCACAAGATATTTTAAGATTAATGCACCACACCTACTGGAATCAAGGTTTCCAATTGTTTGTTAGTTTCTTTGAAATATATGGGGGAAAACTTTTTGATCTCCTCAATGATCGAAAAAAACTTTTCATGAGGGAGGATGGGAAACAACAGGTTTGCATTGTTGGCTTGCAAGAATATAGAGTATCTAAAGTAGAGACAATCAAGGAATTTATTGAGAAAGGAAATGCCACAAGAAGTACTGGCACAACTGGAGCAAATGAGGAATCCTCTCGATCACATGCTATACTTCAGCTTTGCATTAAGAGATCAGCTGATGGGACTGAATCAAAGCCTGCTCGACTTGTGGGCAAACTATCTTTTATAGATCTGGCTGGAAGTGAACGAGGTGCAGATACTACAGATAATGACAAGCAGACTAGGATTGAAGGGGCAGAAATAAATAAAAGCTTACTTGCTCTGAAAGAATGCATTAGAGCTTTGGACAATGACCAAGGGCATATCCCTTTCAGAGGAAGTAAATTGACGGAAGTTCTGCGAGATTCCTTTGTTGGTAATTCGCGCACTGTAATGATATCATGCATTTCACCTAGCTCAGGTTCATGCGAGCATACTCTTAACACGTTAAGATATGCTGACAGAGTGAAGAGCCTGTCAAAAGGAAACAACTCTAGAAGGGATCTTCTTTCTTCCTCAAACCTTAGAGAGTCCACTGTGTTGCCTGGGTCTTCAATTTTAGCTCATGATGATACCTTGGAGGATGAAATAACGTATGTCTCCACTGACAGGAATCGATTTGGTTGGCCCAAACATCCAGAAAGAGAACTCTCTCCTCCAAATAATGTGGACCGTGTTCCAAGTGGTAGAATGGGGGGAAATTTGGCGTCATCTGGGTATTCTAATCCACCAAACGGTCCAAGAGGTGGTCAAAATGACAGAACTGCAAATGAATATGATTACATAGGACCCATATATGAACAAGACAGAACAAGAAAAACGATTAAGAGGGTGGATAACAACCACTTATCTGCTTTTGAAGACAAGAAGAGGATAGAGTCTCGTGTTACTGTTGATGCATCAAATTTTCAGACTACTTATTCTGATCCGGATGATAATTTAAATGCCCTCCTGAAGGAAGAGGAAGATCTAGTAACAGCTCATCGTAGACAGGTGGAGGAAACCATAGACATTGTTAGAGAGGAGATGAATTTACTTGTTGAAGCTGACCAACCAGGAAATCAATTGGATGATTATATTTCCAAATTGAATACCATTTTATCACAAAAGGCTACAGGAATCCTTGAATTGCAGACACAGTTGGCTCAATTTCAGAGACGTTTAAACGAGTATAATGTTTTCGTATCTTCTGGTAATTGA 2025 0.4109 MPRSNSAAHHHRQSSDNFILDAHRSWLQSSTFAQEFGTRSSSLRKIDDDRALSSGLLDLHSLDTELLPESFDDYESILSGNKHVQRSRGLPENNFLKSVPTEKERANNVAKIKVAVRKRPLNKKEIAKREEDIISIDSNFLTVHERKLKVDLTEYVEKHEFVFDAVLNEDVSNNEVYAETVEPIVPLIFQRIKATCFAYGQTGSGKTYTMQPLPLKASQDILRLMHHTYWNQGFQLFVSFFEIYGGKLFDLLNDRKKLFMREDGKQQVCIVGLQEYRVSKVETIKEFIEKGNATRSTGTTGANEESSRSHAILQLCIKRSADGTESKPARLVGKLSFIDLAGSERGADTTDNDKQTRIEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGSCEHTLNTLRYADRVKSLSKGNNSRRDLLSSSNLRESTVLPGSSILAHDDTLEDEITYVSTDRNRFGWPKHPERELSPPNNVDRVPSGRMGGNLASSGYSNPPNGPRGGQNDRTANEYDYIGPIYEQDRTRKTIKRVDNNHLSAFEDKKRIESRVTVDASNFQTTYSDPDDNLNALLKEEEDLVTAHRRQVEETIDIVREEMNLLVEADQPGNQLDDYISKLNTILSQKATGILELQTQLAQFQRRLNEYNVFVSSGN 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium43g00003 674 MobiDBLite consensus disorder prediction 479 532 - -
Vium43g00003 674 PRINTS Kinesin heavy chain signature 191 212 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium43g00003 674 PRINTS Kinesin heavy chain signature 384 405 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium43g00003 674 PRINTS Kinesin heavy chain signature 334 352 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium43g00003 674 PRINTS Kinesin heavy chain signature 300 317 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium43g00003 674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 434 IPR027417 -
Vium43g00003 674 Pfam Kinesin motor domain 117 433 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium43g00003 674 Coils Coil 604 624 - -
Vium43g00003 674 ProSitePatterns Kinesin motor domain signature. 333 344 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vium43g00003 674 ProSiteProfiles Kinesin motor domain profile. 111 434 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium43g00003 674 MobiDBLite consensus disorder prediction 479 494 - -
Vium43g00003 674 MobiDBLite consensus disorder prediction 509 527 - -
Vium43g00003 674 PANTHER KINESIN-RELATED PROTEIN 6 23 668 IPR027640 GO:0003777|GO:0007018
Vium43g00003 674 CDD KISc_KIF2_like 111 432 - -
Vium43g00003 674 FunFam Kinesin-like protein 93 437 - -
Vium43g00003 674 SMART kinesin_4 109 440 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium43g00003 674 Gene3D Kinesin motor domain 92 437 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium43g00003 Vium-Chr43 20406 25858 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium43g00003 110 434 Calmodulin-binding Proteins AT5G65930 34.328 2.96e-44 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium43g00003 K10393 - gmx:100775562 1146.34