Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4390g00002 ATGGCTTCTTTGATCCGTCTGAAATTGTTCTCGATGCTTATGTTCTACTTACTTGGCACCCTTAACATTTTAGCAACTGAAACAGCCTCAACTTTCAGGCACTATGATTGCACAGACAAGCCAAAGTTTAGTCCCAAAAGTAGTTACCAATTGAATCTGAATAAACTCTTATCTAAACTTACATCCAAAGTTAACACCACCAACTATTACAACACCACAGTGAGTGGAACAAACAAACAAGACACTGTCTATGGCCTCTTCACGTGCAATGGATATATGGAGAAATGTGGAGAATGTGTGAATACTTCAATCCAGACACTTAAATCAAAGTGTGTCTTCAACAAAGAGGCTATAATTTGGACCCATGAATGCATGGTTCGCTACTCAAACAGGTTTTTCTACAACACTACTGAGAAAAAGCCATCATGGTGTGTTAAGAACAGTGAGGATTATGAGGGGGAATTGGATATTTTCAACAGAATGCTGAGTTCCTTGATGGAGGATCTTCTGACTGCAGCCAATGAAGCTCAAATGGGTTCTGTTAAATTTGCTGTGAAGAAAATAACATTCTCTCAGGACAAGCAAATTTTTGGCTTTGCTCAGTGCATGCCATACCTCTCCAAGGAAAATTGCAGAAAGTGCCTTAGGGATGCCATGAATTTTCTTCAAACATGTGCAAGAGGCAAGATAGGAGGAAGAGTTATATATCCGAGCTGTATTGTTAGATATGATCATTATCTGTTTTTCCCACTTCTTAGAGGAAAAAGAAAGAATCTGGGAGTAATTGCATCAATCATATTTTTTCATGGCCTTGTTCCAGTTATTGTTTTGTTTTTTGTTTGCTATTTGTTACATAGGGAGTTAAGGAAGGATCTCAAGCACCGGAAAGGAAATTGTGGAGAAGAGATTTCAGCAGAATTGAACTCTCTGCAATTTGAATTGAGTACTATTCAAGAAGCAACAAACAAGTTTTCTGATGATAACAAGATAGGGGAAGGTGGTTTTGGAGCAGTATACAAGGGTGTGTTTTCAAATGGACTTGAAATAGCAGTAAAGAGGCTAAAGAAAAATTCCAGTCAAGGAGCTACAGAATTCAAGAAAGAGGTTTTGCTAATTTCCAAACTTCAACACAGAAATCTTGTGAGACTGATAGGATTTTGCGTGCAAAGGAATGAAAAGATACTGATTTATGAGTTTGTGCACAACAAAAGCCTTGATTACTACCTATTCAGCCCTCAAAATCATAGGAAATTAAGTTGGTCCGAACGTTACGAGATTATAAGAGGAATTGCACGAGGAATTCTCTATCTTCACGAGGATTCTCATCTTAACATTATACACTGTGACCTTAAACCTAGTAACATTTTGTTAGACAACAAAATGAACGCAAAAATATCAGATTTTGGATTAGCAAGGATTATTTCCATTGATCAAATGCAAGGGAATACAAGTATAATTTCTGGAACATATGGCTACATGTCTCCTGAATATGCAATGCTTGGCCAATTTTCTATGAAATCTGATGTTTTTAGTTTTGGAGTTATAATTCTTGAAATAATCAGTGGGAAGAGAAACGTTGATGGGAATGGAAAAGATTTGGATGATCTCTTGAGCCATGTTTGGAAGAAGTGGAAGAAAAACAGAGTACTTGAATTGTTGGATCCCTCATTACCACACTCCTTGTCTGAAACAGAAATCAATAAGTGTGTACAAATTGGTCTATTATGTGTGCAGGGAAACCCAGATCAGAGGCCTATCATGGCAAAAATTGCTTCGTATTTTAGCTGTGATCAAGTTGGAAAACTGCCTTTACCTCAAGAACCAGCATTTTTTATGCGTGGAAAAACAGAAACCAAGGATTTTTAA 1866 0.3719 MASLIRLKLFSMLMFYLLGTLNILATETASTFRHYDCTDKPKFSPKSSYQLNLNKLLSKLTSKVNTTNYYNTTVSGTNKQDTVYGLFTCNGYMEKCGECVNTSIQTLKSKCVFNKEAIIWTHECMVRYSNRFFYNTTEKKPSWCVKNSEDYEGELDIFNRMLSSLMEDLLTAANEAQMGSVKFAVKKITFSQDKQIFGFAQCMPYLSKENCRKCLRDAMNFLQTCARGKIGGRVIYPSCIVRYDHYLFFPLLRGKRKNLGVIASIIFFHGLVPVIVLFFVCYLLHRELRKDLKHRKGNCGEEISAELNSLQFELSTIQEATNKFSDDNKIGEGGFGAVYKGVFSNGLEIAVKRLKKNSSQGATEFKKEVLLISKLQHRNLVRLIGFCVQRNEKILIYEFVHNKSLDYYLFSPQNHRKLSWSERYEIIRGIARGILYLHEDSHLNIIHCDLKPSNILLDNKMNAKISDFGLARIISIDQMQGNTSIISGTYGYMSPEYAMLGQFSMKSDVFSFGVIILEIISGKRNVDGNGKDLDDLLSHVWKKWKKNRVLELLDPSLPHSLSETEINKCVQIGLLCVQGNPDQRPIMAKIASYFSCDQVGKLPLPQEPAFFMRGKTETKDF 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4390g00002 621 FunFam Cysteine-rich receptor-like protein kinase 10 286 399 - -
Vium4390g00002 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Vium4390g00002 621 SUPERFAMILY Protein kinase-like (PK-like) 309 603 IPR011009 -
Vium4390g00002 621 CDD STKc_IRAK 330 594 - -
Vium4390g00002 621 FunFam cysteine-rich receptor-like protein kinase 10 400 600 - -
Vium4390g00002 621 Gene3D Transferase(Phosphotransferase) domain 1 400 599 - -
Vium4390g00002 621 Pfam Salt stress response/antifungal 37 130 IPR002902 -
Vium4390g00002 621 Pfam Salt stress response/antifungal 149 246 IPR002902 -
Vium4390g00002 621 ProSiteProfiles Gnk2-homologous domain profile. 31 133 IPR002902 -
Vium4390g00002 621 Gene3D - 29 133 IPR038408 -
Vium4390g00002 621 Gene3D - 142 248 IPR038408 -
Vium4390g00002 621 ProSiteProfiles Gnk2-homologous domain profile. 139 248 IPR002902 -
Vium4390g00002 621 Gene3D Phosphorylase Kinase; domain 1 287 399 - -
Vium4390g00002 621 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 43 616 - -
Vium4390g00002 621 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Vium4390g00002 621 SMART serkin_6 324 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4390g00002 621 Pfam Protein tyrosine and serine/threonine kinase 327 592 IPR001245 GO:0004672|GO:0006468
Vium4390g00002 621 ProSiteProfiles Protein kinase domain profile. 324 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4390g00002 Vium-Chr4390 19551 22313 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4390g00002 7 620 Receptor kinase-like Gene Family AT4G05200 41.925 5.49e-170 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium4390g00002 PK_Tyr_Ser-Thr 8.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4390g00002 - - mtr:11443024 800.045