Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4388g00007 ATGGAGGAAAATATAATTGTATATTTAGGGACAGGGTGTGGGAAAACTCATATTGCTGTGCTTCTTATGCATGAAATGGGTCATTTGATTCGTAAACCGCAGAAGAACATATGTGTCTTTCTTGCCCCTACTGTTGCTTTAGTTCATCAGCAAGCAAAGGTTATAGCAGACTCTACTGATTTTAAAGTTGGAATTTTCTGTGGAAGTTCCAAGCGCTTGAAACGGCATCAAGACTGGGAACAGGAGATTGGACAATATGAGGTTCTTGTTATGACCCCACAAATATTAGTGCACAACTTATCTCATTGTTTCATCATGATGGAAATGATTGCACTTTTGATATTTGATGAATGTCATCATGCTCAAGTCAAAAGCAACCATGCTTATGCAGTAATCATGAAAATTTTCTACAATAGTAATTCTTCAAAGGTTCCTCGTATATTTGGCATGACGGCATCCCCTGTTGTCGGAAAAGGAGCTTCTAGTGAAGCAAATTTGGCAAGAAGCATCAACAGTCTTGAACATATGCTTGATGCTAAGGTTTACTCTGTTGAAGACAAGGAATTGAAATCATTTGTGACCACTCCTGTAATTAATATATATCACTATGCTTCAACTGCAAGTGGGGAAACTAGTATGTACTTGAAAATTGAAGAAATTAAAAGCCAGTGCATAGCAAACGTTGGTAGAAGTTCAGAAGATCACCAGAAACGGATGAATACAAAGAAACTTCTGAACCGAATGCATGATAATGTGGTTTTCTGTTTACAGAATCTTGGCATTTGGGGAGCACTGCAAGCTAGTCATATTCTTCTGAGTGGTGATCGTTCTGAGAGGCATGAATTAGTGGAGGCAGAAGGAAATTCAAGTGATGACTCTGTGTGTGACACTTATCTTGCTCAAGTTGCTGAACTATTTACTTCACAGTGCATTAAAGGTGACAATGTATCTGATGATTTATCTTCTTCGGAAATATTGAAAGAGCCATTTTTCTCAGCTAAGCTTTTACGACTCTTTGGGATACTCTCCACCTTTAGGTTGCAAAAGAACATGAAATGTATTATTTTTGTGAATCGAATTGTGACTGCGAGTTCCCTATCATACATACTTCAGAAGCTCAAGCTTCTTAGACAATGGAGGAGTGATTATCTAGTAGGAGTACATTCTGGGTTGAAGAGTATGTCCCGTAAAACCATGAACATGATTCTTGACAAGTTTCGCTCTGGAGAGTTGAATTTGTTGGTTGCAACCAAAGTTGGTGAAGAAGGACTTGACATTCAGACATGTTGCCTCGTCATACGTTTTGATCTTCCAGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCACGCATGCCTCAGTCTGAATATGCTTTTATGGTGGACAGTCGTAATAAGAAGGAGCTTGACATAATTGGTGGTTTTGAGAAAGATGAATACCGAATGAATATGGAAGTTACTTTTCGAACATCTGATGAGACATTCATCATCCCTGAGGAAAATATTTTCAGAGTTGAGTCGACTGGTGCTTCTGTTAGTTCTGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTATTTTGACCCCAAGCCAAATTTTTACTTCTTAGATGATTCAGAGGGAATTGTTTGCCACATAAGATTGCCTTCCAATGCACCAATACACCAAATTTTGGGTGCACCACAGTTGTCTATGGAGGCTTCCAAACGAGATGCTTGTCTGAAAGCAATAGAAGAACTATATAAATTAGGTGCTTTAAGTAATTTTCTCTTGCCAAAGGAAGATGATGCAGCGCCAGAAGAACAGGTTTCTGGCTCTACTGATGAAGATGAATGTGAAGATGCCATCTCAAGAGGGGAATTACATGAGATGCTGGTTCCTTCTGCCTTTGGTCAGTCATGGACAAACAAGGATGAAATCGTCCATCTCAACTCGTACTACATAAAATTTTGTCCATGTCCAGTGGATAGGGTCTACAAAGAGTTTGGTCTTTTCATCATGGCCCGTCTTCCAATGGAGGCTGAGAAATTGGAACTTGATCTACATCTTGCTCATGGTCGATCCGTGATGACAAAATTTGTCCCATTTGGAGTTGTAGAATTTAACAAAGATGAGATTAAGATGGCAGAGAAATTTCAAGAAATGTTCCTCAAAATTATTCTGGATAGATTAGAATTTGTTGCCGAGACTGTAGACTTGGGTATGACTGCTGAAGCTGAGACAAGCTCATCGACCTTCTACCTTTTGCTTCCGGTCGTATTGCAAGAATATGGAAATGCCATGAAAGTAGATTGGAAGACAGTGAAAAGATGTCTTTGGTCACCAATCTTCAGGCATCCACAATATACTATGGACAAAAGAAAAATCCCTTTTGATATTCACCTGCAGCTTGCCAATGGTTACAAAAGTGTAAGAGATGTGGAGAATAGTTTAGTGTATGCACCACATAAAAGGACATTTTATTTTGTCACAAATATTGATCATGAAAAGACTGGATTTAGTCTTCATAAAGAATCAGGCACTTCAAGCTACGCGGATGACTTAATTGAAAAGTTTTCCATTCATCTCAAATACCCAGAACAACCACTTCTGCATGTGAAACCACTCCCCAATTTGCACAACCTGCTACACAACCGAAAGCGTGAAGATGCAGAACCACAGGAGCTGGATGAATATTTAATTTATTTACCTCCCGAGCTATGTGAACTGAAAATAATAGGCTTTTCGAAGGATATTGGTAGTTCCATATCTTTGCTACCCTCAATTATGCATCGACTTGGAAACTTGCTGGTGGCTATTGAACTAAAGCAATTGCTATCTTTTTCTTTTCCCGAGGCAGCCGAAGTTAGTGCCCTTAGAGTTTTAGAGGCTCTCACCACTGAGAAGTGTCAGGAGCGCTTTTCCCTTGAAAGACTTGAAGTACTTGGTGATGCTTTCCTTAAATTTGTTGTTGCACGCCATTTTTTTCTCGTGCATGACAGCTTTCATGAAGGAGACCTAACAAAAAGGCGTTCCAATGCTGTAAATAATTCCAATTTGTTGAAGTTGGCCATTGGGCGCAATTTGCAGATCTATATATGCGATCAGATATTTGATCCCTCTCAATTTTATGCATTAGGCCGTCCTTGCCCAAGAATTTGTTGTAAAGAAACTGAAGAAAGCATACACTTTTGTGCAAATTCTGTTAAAGAGCAAGGAAAAGTAACTGAAAACCGATGTAACAAAAATCATCATTGGCTACATAAGAAAACAGTTGCTGATGTGGTGGAAGCTCTGGTTGGAGCATTCCTAGTTGACAGTGGCTTTAAAGCCGCAGTTGCCTTTCTTACTTGGATTGGCATACAAGTTGGTTTTGAAGCTTCACAAGTGGTTGATATTTGCATGGCAAGTGCTGGCTATATCCCTCTTTCTTCTGATGTAGACATTCCTTCTCTTGAAAGTAAACTAGGACATCAATTTTTACATAAGGGTCTGCTTCTCCAGGCATTTGTGCACCCTTCTTACAATAAGCTTGGAGGAGGCTGTTATCAGCGATTGGAGTTTCTTGGAGATGCTGTCCTGGATTATTTGATTGCTTCATATCTATTCTCAGCTTATCCCAAACTAAAGCCTGGTCAATTGACAGATTTGAGATCATTGTCTGCTAACAACAAGGCATTTGCCTGTGTAGCAGTAGATCGAAGTTTTGATAAATATCTTTTATGTGATTCAAATAGATTGTCTGAGGCGATAAAAAAGTATGTAGACTACGTTCGAAGTCCTTCAACAGATAGTGGCATTAAAGAAGGGCCAAAATATCCCAAGGCATTGGGTGACGTAGTGGAATCTTGTGTTGGTGCCATCCTTCTAGATACTGGGTTCAATTTGAACAAAGTTTGGAAAATTATGACTTCGTTCTTGGACCCAATCATGAAATTCTCATCAAGCTTGCAGCTGAGTCCTATTAGGGATTTGCGAGAACTTTGCCAAGCTCATAATTTGGAGTTGGAGTTTCTGCCAGTGGCATCAAAACTGACTAAAACGTTTACAGTTGAAGCGAAAGCAAGTGGGAATAATGTATGTGAAACAGCTTCAGCGACTGGCCAAAATAAAAAGGAGGCTTGTAGAATTGCTTCGCTGATACTTTTTTCAAAGTTCAAGGCTCAAGGGTGGAAAGCAAAGTCAAAAACTTTGGAAGAAGTTCTGGAATCAACTTCTAAAATGGAACCAAAACTTATTGGCTATGATGAAACTCCCATTGATGTAACTGATACCAATACTGCCAAGCATATAATGGTAACTGCAGACTTGTACAGCAAATCAAACCCAGAAATTCGACGTATCCCAGATACAGATGAAATATGCTCTCCATGCGTGAAACGTGTTGGTCAAGTGCTTCAATCTTCTATGAGGGAAAAGCTCAGTGAAATATCTGAAAATCATTGCAGTAGTGAATCATCAGGGGCAGGAACTTCAAGATCACGACTGTATGAATTGTGTGCTGCTTATTGTTGGAAACCTCCTTCATTTGAATGCTGCAAAGAAGAGGGACCAGCTCACCTCAAACAATTCACTTACAAGATGACCTTGGAGATAGAAGAGGTCCCTGATACGATTTTAGAGTTTGTTGGCGAACCTCGGTCAAAAAAGAAAGATGCTGCAGAGAGTGCGGCTCAGGGTGCATTTTGGTACCTGCAACAGGAAGGCTACTTTGCCTAG 4722 0.3977 MEENIIVYLGTGCGKTHIAVLLMHEMGHLIRKPQKNICVFLAPTVALVHQQAKVIADSTDFKVGIFCGSSKRLKRHQDWEQEIGQYEVLVMTPQILVHNLSHCFIMMEMIALLIFDECHHAQVKSNHAYAVIMKIFYNSNSSKVPRIFGMTASPVVGKGASSEANLARSINSLEHMLDAKVYSVEDKELKSFVTTPVINIYHYASTASGETSMYLKIEEIKSQCIANVGRSSEDHQKRMNTKKLLNRMHDNVVFCLQNLGIWGALQASHILLSGDRSERHELVEAEGNSSDDSVCDTYLAQVAELFTSQCIKGDNVSDDLSSSEILKEPFFSAKLLRLFGILSTFRLQKNMKCIIFVNRIVTASSLSYILQKLKLLRQWRSDYLVGVHSGLKSMSRKTMNMILDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFMVDSRNKKELDIIGGFEKDEYRMNMEVTFRTSDETFIIPEENIFRVESTGASVSSGYSISLLHQYCSKLPHDEYFDPKPNFYFLDDSEGIVCHIRLPSNAPIHQILGAPQLSMEASKRDACLKAIEELYKLGALSNFLLPKEDDAAPEEQVSGSTDEDECEDAISRGELHEMLVPSAFGQSWTNKDEIVHLNSYYIKFCPCPVDRVYKEFGLFIMARLPMEAEKLELDLHLAHGRSVMTKFVPFGVVEFNKDEIKMAEKFQEMFLKIILDRLEFVAETVDLGMTAEAETSSSTFYLLLPVVLQEYGNAMKVDWKTVKRCLWSPIFRHPQYTMDKRKIPFDIHLQLANGYKSVRDVENSLVYAPHKRTFYFVTNIDHEKTGFSLHKESGTSSYADDLIEKFSIHLKYPEQPLLHVKPLPNLHNLLHNRKREDAEPQELDEYLIYLPPELCELKIIGFSKDIGSSISLLPSIMHRLGNLLVAIELKQLLSFSFPEAAEVSALRVLEALTTEKCQERFSLERLEVLGDAFLKFVVARHFFLVHDSFHEGDLTKRRSNAVNNSNLLKLAIGRNLQIYICDQIFDPSQFYALGRPCPRICCKETEESIHFCANSVKEQGKVTENRCNKNHHWLHKKTVADVVEALVGAFLVDSGFKAAVAFLTWIGIQVGFEASQVVDICMASAGYIPLSSDVDIPSLESKLGHQFLHKGLLLQAFVHPSYNKLGGGCYQRLEFLGDAVLDYLIASYLFSAYPKLKPGQLTDLRSLSANNKAFACVAVDRSFDKYLLCDSNRLSEAIKKYVDYVRSPSTDSGIKEGPKYPKALGDVVESCVGAILLDTGFNLNKVWKIMTSFLDPIMKFSSSLQLSPIRDLRELCQAHNLELEFLPVASKLTKTFTVEAKASGNNVCETASATGQNKKEACRIASLILFSKFKAQGWKAKSKTLEEVLESTSKMEPKLIGYDETPIDVTDTNTAKHIMVTADLYSKSNPEIRRIPDTDEICSPCVKRVGQVLQSSMREKLSEISENHCSSESSGAGTSRSRLYELCAAYCWKPPSFECCKEEGPAHLKQFTYKMTLEIEEVPDTILEFVGEPRSKKKDAAESAAQGAFWYLQQEGYFA 1573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4388g00007 1573 FunFam Endoribonuclease dicer-like protein 1 223 - -
Vium4388g00007 1573 SUPERFAMILY dsRNA-binding domain-like 1276 1387 - -
Vium4388g00007 1573 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 334 504 IPR001650 -
Vium4388g00007 1573 SUPERFAMILY RNase III domain-like 1149 1313 IPR036389 GO:0004525|GO:0006396
Vium4388g00007 1573 CDD DSRM_EIF2AK2-like 1320 1387 - -
Vium4388g00007 1573 Gene3D - 1319 1398 - -
Vium4388g00007 1573 FunFam Endoribonuclease dicer-like 1 513 609 - -
Vium4388g00007 1573 ProSitePatterns Ribonuclease III family signature. 1185 1193 IPR000999 GO:0004525|GO:0006396
Vium4388g00007 1573 Gene3D Dicer dimerisation domain 514 610 IPR038248 -
Vium4388g00007 1573 PANTHER DICER-RELATED 2 1392 - -
Vium4388g00007 1573 CDD RIBOc 963 1119 IPR000999 GO:0004525|GO:0006396
Vium4388g00007 1573 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 172 IPR014001 -
Vium4388g00007 1573 Gene3D paz domain 807 911 - -
Vium4388g00007 1573 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1492 1568 IPR014720 -
Vium4388g00007 1573 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1321 1389 IPR014720 -
Vium4388g00007 1573 FunFam Endoribonuclease dicer-like 1 1144 1315 - -
Vium4388g00007 1573 Gene3D - 1 225 IPR027417 -
Vium4388g00007 1573 ProSiteProfiles Ribonuclease III family domain profile. 940 1109 IPR000999 GO:0004525|GO:0006396
Vium4388g00007 1573 Pfam Helicase conserved C-terminal domain 346 452 IPR001650 -
Vium4388g00007 1573 Gene3D Ribonuclease III domain 943 1120 IPR036389 GO:0004525|GO:0006396
Vium4388g00007 1573 Pfam Dicer dimerisation domain 518 602 - -
Vium4388g00007 1573 Pfam Type III restriction enzyme, res subunit 3 154 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vium4388g00007 1573 SMART riboneu5 962 1129 IPR000999 GO:0004525|GO:0006396
Vium4388g00007 1573 SMART riboneu5 1165 1317 IPR000999 GO:0004525|GO:0006396
Vium4388g00007 1573 SUPERFAMILY RNase III domain-like 962 1123 IPR036389 GO:0004525|GO:0006396
Vium4388g00007 1573 SUPERFAMILY dsRNA-binding domain-like 1495 1571 - -
Vium4388g00007 1573 FunFam Endoribonuclease dicer-like 1 325 488 - -
Vium4388g00007 1573 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 518 608 IPR005034 GO:0016891
Vium4388g00007 1573 SMART PAZ_2_a_3 789 939 IPR003100 GO:0005515
Vium4388g00007 1573 SUPERFAMILY PAZ domain 809 911 IPR036085 GO:0005515
Vium4388g00007 1573 ProSiteProfiles PAZ domain profile. 813 913 IPR003100 GO:0005515
Vium4388g00007 1573 Gene3D - 1499 1568 - -
Vium4388g00007 1573 Pfam PAZ domain 812 934 IPR003100 GO:0005515
Vium4388g00007 1573 SMART ultradead3 1 190 IPR014001 -
Vium4388g00007 1573 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1493 1567 - -
Vium4388g00007 1573 Gene3D Ribonuclease III domain 1148 1318 IPR036389 GO:0004525|GO:0006396
Vium4388g00007 1573 SMART DRBM_3 1493 1567 IPR014720 -
Vium4388g00007 1573 SMART DRBM_3 1322 1388 IPR014720 -
Vium4388g00007 1573 CDD DEXHc_dicer 1 186 - -
Vium4388g00007 1573 Pfam Ribonuclease III domain 1185 1294 IPR000999 GO:0004525|GO:0006396
Vium4388g00007 1573 Pfam Ribonuclease III domain 978 1109 IPR000999 GO:0004525|GO:0006396
Vium4388g00007 1573 ProSiteProfiles Ribonuclease III family domain profile. 1150 1294 IPR000999 GO:0004525|GO:0006396
Vium4388g00007 1573 Gene3D - 327 487 IPR027417 -
Vium4388g00007 1573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 466 IPR027417 -
Vium4388g00007 1573 SMART helicmild6 364 454 IPR001650 -
Vium4388g00007 1573 CDD DSRM_DCL_plant 1499 1568 - -
Vium4388g00007 1573 CDD RIBOc 1166 1316 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4388g00007 Vium-Chr4388 52684 75369 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4388g00007 352 451 Eukaryotic Initiation Factors Gene Family AT1G72730 30.000 1.38e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4388g00007 K11592 - gmx:100818702 2742.99