Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4388g00006 ATGCCTGACGGAGAGTCCTCGGCTGTGGTGGGCGACCAACCCTCCATGGACCCTTCTTTAAGTCTGTCCAATCAACAACTGTCCCTCGGTCTTTCCCAAGTTGAACTTGACGATGACGCAGTCAAGAAAGATCCCCGGAAAATTGCAAGAAAGTATCAGTTGGAGTTGTGCAAAAAAGCTATGGAGGAAAATATAATTGTATATTTAGGGACAGGGTGTGGGAAAACTCATATTGCTGTGCTTCTTATGCATGAAATGGGTCATTTGATTCGTAAACCGCAGAAGAACATATGTGTCTTTCTTGCCCCTACTGTTGCTTTAGTTCATCAGCAAGCAAAGGTTATAGCAGACTCTACTGATTTTAAAGTTGGAATTTTCTGTGGAAGTTCCAAGCGCTTGAAACGGCATCAAGACTGGGAACAGGAGATTGGACAATATGAGGTTCTTGTTATGACCCCACAAATATTAGTGCACAACTTATCTCATTGTTTCATCATGATGGAAATGATTGCACTTTTGATATTTGATGAATGTCATCATGCTCAAGTCAAAAGCAACCATGCTTATGCAGTAATCATGAAAATTTTCTACAATAGTAATTCTTCAAAGGTTCCTCGTATATTTGGCATGACGGCATCCCCTGTTGTCGGAAAAGGAGCTTCTAGTGAAGCAAATTTGGCAAGAAGCATCAACAGTCTTGAACATATGCTTGATGCTAAGGTTTACTCTGTTGAAGACAAGGAATTGAAATCATTTGTGACCACTCCTGTAATTAATATATATCACTATGCTTCAACTGCAAGTGGGGAAACTAGTATGTACTTGAAAATTGAAGAAATTAAAAGCCAGTGCATAGCAAACGTTGGTAGAAGTTCAGAAGATCACCAGAAACGGATGAATACAAAGAAACTTCTGAACCGAATGCATGATAATGTGGTTTTCTGTTTACAGAATCTTGGCATTTGGGGAGCACTGCAAGCTAGTCATATTCTTCTGAGTGGTGATCGTTCTGAGAGGCATGAATTAGTGGAGGCAGAAGGAAATTCAAGTGATGACTCTGTGTGTGACACTTATCTTGCTCAAGTTGCTGAACTATTTACTTCACAGTGCATTAAAGGTGACAATGTATCTGATGATTTATCTTCTTCGGAAATATTGAAAGAGCCATTTTTCTCAGCTAAGCTTTTACGACTCTTTGGGATACTCTCCACCTTTAGGTTGCAAAAGAACATGAAATGTATTATTTTTGTGAATCGAATTGTGACTGCGAGTTCCCTATCATACATACTTCAGAAGCTCAAGCTTCTTAGACAATGGAGGAGTGATTATCTAGTAGGAGTACATTCTGGGTTGAAGAGTATGTCCCGTAAAACCATGAACATGATTCTTGACAAGTTTCGCTCTGGAGAGTTGAATTTGTTGGTTGCAACCAAAGTTGGTGAAGAAGGACTTGACATTCAGACATGTTGCCTCGTCATACGTTTTGATCTTCCAGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCACGCATGCCTCAGTCTGAATATGCTTTTATGGTGGACAGTCGTAATAAGAAGGAGCTTGACATAATTGGTGGTTTTGAGAAAGATGAATACCGAATGAATATGGAAGTTACTTTTCGAACATCTGATGAGACATTCATCATCCCTGAGGAAAATATTTTCAGAGTTGAGTCGACTGGTGCTTCTGTTAGTTCTGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTATTTTGACCCCAAGCCAAATTTTTACTTCTTAGATGATTCAGAGGGAATTGTTTGCCACATAAGATTGCCTTCCAATGCACCAATACACCAAATTTTGGGTGCACCACAGTTGTCTATGGAGGCTTCCAAACGAGATGCTTGTCTGAAAGCAATAGAAGAACTATATAAATTAGGTGCTTTAAGTAATTTTCTCTTGCCAAAGGAAGATGATGCAGCGCCAGAAGAACAGGTTTCTGGCTCTACTGATGAAGATGAATGTGAAGATGCCATCTCAAGAGGGGAATTACATGAGATGCTGGTTCCTTCTGCCTTTGGTCAGTCATGGACAAACAAGGATGAAATCGTCCATCTCAACTCGTACTACATAAAATTTTGTCCATGTCCAGTGGATAGGGTCTACAAAGAGTTTGGTCTTTTCATCATGGCCCGTCTTCCAATGGAGGCTGAGAAATTGGAACTTGATCTACATCTTGCTCATGGTCGATCCGTGATGACAAAATTTGTCCCATTTGGAGTTGTAGAATTTAACAAAGATGAGATTAAGATGGCAGAGAAATTTCAAGAAATGTTCCTCAAAATTATTCTGGATAGATTAGAATTTGTTGCCGAGACTGTAGACTTGGGTATGACTGCTGAAGCTGAGACAAGCTCATCGACCTTCTACCTTTTGCTTCCGGTCGTATTGCAAGAATATGGAAATGCCATGAAAGTAGATTGGAAGACAGTGAAAAGATGTCTTTGGTCACCAATCTTCAGGCATCCACAATATACTATGGACAAAAGAAAAATCCCTTTTGATATTCACCTGCAGCTTGCCAATGGTTACAAAAGTGTAAGAGATGTGGAGAATAGTTTAGTGTATGCACCACATAAAAGGACATTTTATTTTGTCACAAATATTGATCATGAAAAGACTGGATTTAGTCTTCATAAAGAATCAGGCACTTCAAGCTACGCGGATGACTTAATTGAAAAGTTTTCCATTCATCTCAAATACCCAGAACAACCACTTCTGCATGTGAAACCACTCCCCAATTTGCACAACCTGCTACACAACCGAAAGCGTGAAGATGCAGAACCACAGGAGCTGGATGAATATTTAATTTATTTACCTCCCGAGCTATGTGAACTGAAAATAATAGGCTTTTCGAAGGATATTGGTAGTTCCATATCTTTGCTACCCTCAATTATGCATCGACTTGGAAACTTGCTGGTGGCTATTGAACTAAAGCAATTGCTATCTTTTTCTTTTCCCGAGGCAGCCGAAGTTAGTGCCCTTAGAGTTTTAGAGGCTCTCACCACTGAGAAGTGTCAGGAGCGCTTTTCCCTTGAAAGACTTGAAGTACTTGGTGATGCTTTCCTTAAATTTGTTGTTGCACGCCATTTTTTTCTCGTGCATGACAGCTTTCATGAAGGAGACCTAACAAAAAGGCGTTCCAATGCTGTAAATAATTCCAATTTGTTGAAGTTGGCCATTGGGCGCAATTTGCAGATCTATATATGCGATCAGATATTTGATCCCTCTCAATTTTATGCATTAGGCCGTCCTTGCCCAAGAATTTGTTGTAAAGAAACTGAAGAAAGCATACACTTTTGTGCAAATTCTGTTAAAGAGCAAGGAAAAGTAACTGAAAACCGATGTAACAAAAATCATCATTGGCTACATAAGAAAACAGTTGCTGATGTGGTGGAAGCTCTGGTTGGAGCATTCCTAGTTGACAGTGGCTTTAAAGCCGCAGTTGCCTTTCTTACTTGGATTGGCATACAAGTTGGTTTTGAAGCTTCACAAGTGGTTGATATTTGCATGGCAAGTGCTGGCTATATCCCTCTTTCTTCTGATGTAGACATTCCTTCTCTTGAAAGTAAACTAGGACATCAATTTTTACATAAGGGTCTGCTTCTCCAGGCATTTGTGCACCCTTCTTACAATAAGCTTGGAGGAGGCTGTTATCAGCGATTGGAGTTTCTTGGAGATGCTGTCCTGGATTATTTGATTGCTTCATATCTATTCTCAGCTTATCCCAAACTAAAGCCTGGTCAATTGACAGATTTGAGATCATTGTCTGCTAACAACAAGGCATTTGCCTGTGTAGCAGTAGATCGAAGTTTTGATAAATATCTTTTATGTGATTCAAATAGATTGTCTGAGGCGATAAAAAAGTATGTAGACTACGTTCGAAGTCCTTCAACAGATAGTGGCATTAAAGAAGGGCCAAAATATCCCAAGGCATTGGGTGACGTAGTGGAATCTTGTGTTGGTGCCATCCTTCTAGATACTGGGTTCAATTTGAACAAAGTTTGGAAAATTATGACTTCGTTCTTGGACCCAATCATGAAATTCTCATCAAGCTTGCAGCTGAGTCCTATTAGGGATTTGCGAGAACTTTGCCAAGCTCATAATTTGGAGTTGGAGTTTCTGCCAGTGGCATCAAAACTGACTAAAACGTTTACAGTTGAAGCGAAAGCAAGTGGGAATAATGTATGTGAAACAGCTTCAGCGACTGGCCAAAATAAAAAGGAGGCTTGTAGAATTGCTTCGCTGATACTTTTTTCAAAGTTCAAGGCTCAAGGGTGGAAAGCAAAGTCAAAAACTTTGGAAGAAGTTCTGGAATCAACTTCTAAAATGGAACCAAAACTTATTGGCTATGATGAAACTCCCATTGATGTAACTGATACCAATACTGCCAAGCATATAATGGTAACTGCAGACTTGTACAGCAAATCAAACCCAGAAATTCGACGTATCCCAGATACAGATGAAATATGCTCTCCATGCGTGAAACGTGTTGGTCAAGTGCTTCAATCTTCTATGAGGGAAAAGCTCAGTGAAATATCTGAAAATCATTGCAGTAGTGAATCATCAGGGGCAGGAACTTCAAGATCACGACTGTATGAATTGTGTGCTGCTTATTGTTGGAAACCTCCTTCATTTGAATGCTGCAAAGAAGAGGGACCAGCTCACCTCAAACAATTCACTTACAAGATGACCTTGGAGATAGAAGAGGTCCCTGATACGATTTTAGAGTTTGTTGGCGAACCTCGGTCAAAAAAGAAAGATGCTGCAGAGAGTGCGGCTCAGGGTGCATTTTGGTACCTGCAACAGGAAGGCTACTTTGCCTAG 4902 0.4013 MPDGESSAVVGDQPSMDPSLSLSNQQLSLGLSQVELDDDAVKKDPRKIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMHEMGHLIRKPQKNICVFLAPTVALVHQQAKVIADSTDFKVGIFCGSSKRLKRHQDWEQEIGQYEVLVMTPQILVHNLSHCFIMMEMIALLIFDECHHAQVKSNHAYAVIMKIFYNSNSSKVPRIFGMTASPVVGKGASSEANLARSINSLEHMLDAKVYSVEDKELKSFVTTPVINIYHYASTASGETSMYLKIEEIKSQCIANVGRSSEDHQKRMNTKKLLNRMHDNVVFCLQNLGIWGALQASHILLSGDRSERHELVEAEGNSSDDSVCDTYLAQVAELFTSQCIKGDNVSDDLSSSEILKEPFFSAKLLRLFGILSTFRLQKNMKCIIFVNRIVTASSLSYILQKLKLLRQWRSDYLVGVHSGLKSMSRKTMNMILDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFMVDSRNKKELDIIGGFEKDEYRMNMEVTFRTSDETFIIPEENIFRVESTGASVSSGYSISLLHQYCSKLPHDEYFDPKPNFYFLDDSEGIVCHIRLPSNAPIHQILGAPQLSMEASKRDACLKAIEELYKLGALSNFLLPKEDDAAPEEQVSGSTDEDECEDAISRGELHEMLVPSAFGQSWTNKDEIVHLNSYYIKFCPCPVDRVYKEFGLFIMARLPMEAEKLELDLHLAHGRSVMTKFVPFGVVEFNKDEIKMAEKFQEMFLKIILDRLEFVAETVDLGMTAEAETSSSTFYLLLPVVLQEYGNAMKVDWKTVKRCLWSPIFRHPQYTMDKRKIPFDIHLQLANGYKSVRDVENSLVYAPHKRTFYFVTNIDHEKTGFSLHKESGTSSYADDLIEKFSIHLKYPEQPLLHVKPLPNLHNLLHNRKREDAEPQELDEYLIYLPPELCELKIIGFSKDIGSSISLLPSIMHRLGNLLVAIELKQLLSFSFPEAAEVSALRVLEALTTEKCQERFSLERLEVLGDAFLKFVVARHFFLVHDSFHEGDLTKRRSNAVNNSNLLKLAIGRNLQIYICDQIFDPSQFYALGRPCPRICCKETEESIHFCANSVKEQGKVTENRCNKNHHWLHKKTVADVVEALVGAFLVDSGFKAAVAFLTWIGIQVGFEASQVVDICMASAGYIPLSSDVDIPSLESKLGHQFLHKGLLLQAFVHPSYNKLGGGCYQRLEFLGDAVLDYLIASYLFSAYPKLKPGQLTDLRSLSANNKAFACVAVDRSFDKYLLCDSNRLSEAIKKYVDYVRSPSTDSGIKEGPKYPKALGDVVESCVGAILLDTGFNLNKVWKIMTSFLDPIMKFSSSLQLSPIRDLRELCQAHNLELEFLPVASKLTKTFTVEAKASGNNVCETASATGQNKKEACRIASLILFSKFKAQGWKAKSKTLEEVLESTSKMEPKLIGYDETPIDVTDTNTAKHIMVTADLYSKSNPEIRRIPDTDEICSPCVKRVGQVLQSSMREKLSEISENHCSSESSGAGTSRSRLYELCAAYCWKPPSFECCKEEGPAHLKQFTYKMTLEIEEVPDTILEFVGEPRSKKKDAAESAAQGAFWYLQQEGYFA 1633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4388g00006 1633 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 578 668 IPR005034 GO:0016891
Vium4388g00006 1633 SMART PAZ_2_a_3 849 999 IPR003100 GO:0005515
Vium4388g00006 1633 SUPERFAMILY PAZ domain 869 971 IPR036085 GO:0005515
Vium4388g00006 1633 Gene3D Dicer dimerisation domain 574 670 IPR038248 -
Vium4388g00006 1633 FunFam Endoribonuclease dicer-like 1 385 548 - -
Vium4388g00006 1633 Pfam PAZ domain 872 994 IPR003100 GO:0005515
Vium4388g00006 1633 SUPERFAMILY dsRNA-binding domain-like 1555 1631 - -
Vium4388g00006 1633 Pfam Ribonuclease III domain 1038 1169 IPR000999 GO:0004525|GO:0006396
Vium4388g00006 1633 Pfam Ribonuclease III domain 1245 1354 IPR000999 GO:0004525|GO:0006396
Vium4388g00006 1633 Gene3D - 1379 1458 - -
Vium4388g00006 1633 SMART DRBM_3 1382 1448 IPR014720 -
Vium4388g00006 1633 SMART DRBM_3 1553 1627 IPR014720 -
Vium4388g00006 1633 Gene3D Ribonuclease III domain 1208 1378 IPR036389 GO:0004525|GO:0006396
Vium4388g00006 1633 Gene3D Ribonuclease III domain 1003 1180 IPR036389 GO:0004525|GO:0006396
Vium4388g00006 1633 ProSiteProfiles PAZ domain profile. 873 973 IPR003100 GO:0005515
Vium4388g00006 1633 CDD DSRM_DCL_plant 1559 1628 - -
Vium4388g00006 1633 ProSiteProfiles Ribonuclease III family domain profile. 1210 1354 IPR000999 GO:0004525|GO:0006396
Vium4388g00006 1633 ProSitePatterns Ribonuclease III family signature. 1245 1253 IPR000999 GO:0004525|GO:0006396
Vium4388g00006 1633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 526 IPR027417 -
Vium4388g00006 1633 SUPERFAMILY RNase III domain-like 1209 1373 IPR036389 GO:0004525|GO:0006396
Vium4388g00006 1633 SUPERFAMILY RNase III domain-like 1022 1183 IPR036389 GO:0004525|GO:0006396
Vium4388g00006 1633 SMART riboneu5 1225 1377 IPR000999 GO:0004525|GO:0006396
Vium4388g00006 1633 SMART riboneu5 1022 1189 IPR000999 GO:0004525|GO:0006396
Vium4388g00006 1633 CDD RIBOc 1226 1376 IPR000999 GO:0004525|GO:0006396
Vium4388g00006 1633 Gene3D - 387 547 IPR027417 -
Vium4388g00006 1633 FunFam Endoribonuclease dicer-like 1 1204 1375 - -
Vium4388g00006 1633 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 232 IPR014001 -
Vium4388g00006 1633 SMART helicmild6 424 514 IPR001650 -
Vium4388g00006 1633 MobiDBLite consensus disorder prediction 1 22 - -
Vium4388g00006 1633 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1553 1627 - -
Vium4388g00006 1633 CDD DSRM_EIF2AK2-like 1380 1447 - -
Vium4388g00006 1633 Gene3D - 47 285 IPR027417 -
Vium4388g00006 1633 Pfam Dicer dimerisation domain 578 662 - -
Vium4388g00006 1633 Pfam DEAD/DEAH box helicase 51 212 IPR011545 GO:0003676|GO:0005524
Vium4388g00006 1633 CDD RIBOc 1023 1179 IPR000999 GO:0004525|GO:0006396
Vium4388g00006 1633 Gene3D - 1559 1628 - -
Vium4388g00006 1633 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 564 IPR001650 -
Vium4388g00006 1633 FunFam Endoribonuclease dicer-like 1 573 669 - -
Vium4388g00006 1633 SMART ultradead3 45 250 IPR014001 -
Vium4388g00006 1633 ProSiteProfiles Ribonuclease III family domain profile. 1000 1169 IPR000999 GO:0004525|GO:0006396
Vium4388g00006 1633 PANTHER DICER-RELATED 62 1452 - -
Vium4388g00006 1633 FunFam Endoribonuclease dicer-like protein 44 283 - -
Vium4388g00006 1633 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1381 1449 IPR014720 -
Vium4388g00006 1633 Gene3D paz domain 867 971 - -
Vium4388g00006 1633 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1552 1628 IPR014720 -
Vium4388g00006 1633 CDD DEXHc_dicer 47 246 - -
Vium4388g00006 1633 Pfam Helicase conserved C-terminal domain 406 512 IPR001650 -
Vium4388g00006 1633 SUPERFAMILY dsRNA-binding domain-like 1336 1447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4388g00006 Vium-Chr4388 52684 78617 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4388g00006 412 511 Eukaryotic Initiation Factors Gene Family AT1G72730 30.000 1.58e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4388g00006 K11592 - gmx:100818702 2818.49