Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4388g00004 ATGTCAGGGTGGGACGAAGGAGCCGTCTACTACAGCGACCAAGCGCTCGCCGGAGACGACGGTGCCGGCGCCCGTGGGGAGGCCGGCACCGATTCGAACCACTCCCTCCTCCAGAAATTCAAGGAGTTCATCCGAAACTTCGAGACCGCCAACAACGTCTTCCCTTACAGAGAGAGCCTACTCCACAACCCTAAGTTCCTTCTAGTCGATATGGGAGATCTCGACACGTTCGACTCCGACCTTCCTGCCAAAATCCGCACTTCCCCCGCCGATATTTTGCCCCTGTTCGAAACGGCAGCGGCGCAGGTTCTCGTGAGTTTGAAGACCAAGGTTGCTGGAGATACTGGAGCCATGGAGGATCCTATTCCCGGTGATGTTCAGATTTTGCTCACCTCCAAGGAGGATCCGATTTCCATGAGATCGCTTGGGGCTCAGTACATATCGAGACTTGTTAAAATCGCCGGGATTACTATTGCTGCCTCCAGGACTAAGGCAAAGGCCACTTATGTTACCCTGATATGTAAAAACTGTAAGAAGGGGAAGCAGGTTCCATGTCGGCCAGGACTTGGAGGAGCCATTGTTCCTCGATCCTGTGATCATGTTCCTCAGCCTGGAGAAGAGCCTTGCCCAATTGATCCCTGGCTTGTGGTCCCTGACAAGAGCAGATATGTTGACCAACAAACTTTGAAGCTGCAGGAAAATCCAGAGGACGTTCCACCTGGAGAGCTTCCTAGAAACCTGCTTCTCTCTGTTGATCGTCATCTGGTTCAGACAGTAGTACCTGGCGCAAGATTGTCAATCATGGGAATTTATAGTGTCTACCAGGCTTCTAACTCTTCTACATCCCACAAAGGAGCTGTTGCAGTTAGACAGCCTTATATTAGGGTTGTAGGCATAGAAGAAACAAACGAGACCCAGTCTCGTGGTCCAGCTGCATATACACAAGACGAGATAGAAGAATTTAAAAAATTTGCTGCCGAACCTGATGCGTATAAGAATATCTGCTCCAAAATTGCTCCATCTATATTTGGTCACGATGATGTCAAAAAGGCTGTAGCCTGTCTTCTGTTTGGAGGGTCAAGAAAGCATTTGCCCGATGGAGTCCGGTTAAGAGGTGACATCAATGTGTTGCTTCTGGGTGATCCATCTACAGCTAAGTCACAGTTTCTGAAGTTTGTTGAAAAGACTGCTCCTATTGCTGTTTATACTTCTGGGAAAGGTTCATCAGCTGCTGGCCTTACAGCTTCTGTAATACAGGATAGCAGTACGCGTGAGTTTTATCTTGAAGGAGGAGCCATGGTCTTGGCTGATGGAGGTGTTGTATGTATCGATGAATTTGATAAAATGAGACCAGAAGATAGAGTTGCTATTCATGAAGCCATGGAACAGCAAACAATATCCATTGCCAAAGCGGGAATAACAACTGTTCTTAACTCACGAACTTCAGTACTTGCGGCTGCCAACCCTCCATCTGGACGTTATGATGATCTCAAGACTGCACAGGATAACATTGACTTGCAGACAACCATTCTTTCTCGGTTTGACTTGATTTTTATTGTGAAAGATGTCAGAATGTACAGTCAAGACAAGATAATTGCTAATCATATCATAAAGGTCCATGCATCGGCTGGACGGGCTGGTGCATTGATGGGTGAGAGCAAAACTTCTAAAGAAGAGAATTGGCTGAAGAGGTATTTACAATATTGCCGAAATGAATGCCACCCTCGCCTATCCGAATCTGCAACTACATTATTGCAGAATCATTATGTGAAAATCAGACAGGATATGAGGAAACAATCCAATGAAACTGGAGAAGCTGCAGCAATACCGATAACTGTAAGGCAGCTGGAAGCAATTGTTAGGTTGAGTGAAGCACTTGCAAAGATGAAGCTATCTCATCTTGCTACTGAGGAAAATGTGCAAGAAGCAGTAAGGCTTTTCACTGTGTCCACAATGGATGCAGCTAAGTCCGGGATAAACCAACAAATAAATCTTACACCTGATATGGCAAATGAAATAAAGCAAGCTGAAACTCAGATAAAGAGAAGAATTGGGATTGGAAACCACATATCAGAAAGGAGGCTGATTGATGACCTTAGCAGAATGGGGATGAATGAGTCTATCGTGAGAAGAGCTCTTATAATCATGCACCAGAGGGACGAAATAGAGTACAAGAGAGAAAGACGTGTTGTATTTAGGAAGGCATGA 2208 0.4579 MSGWDEGAVYYSDQALAGDDGAGARGEAGTDSNHSLLQKFKEFIRNFETANNVFPYRESLLHNPKFLLVDMGDLDTFDSDLPAKIRTSPADILPLFETAAAQVLVSLKTKVAGDTGAMEDPIPGDVQILLTSKEDPISMRSLGAQYISRLVKIAGITIAASRTKAKATYVTLICKNCKKGKQVPCRPGLGGAIVPRSCDHVPQPGEEPCPIDPWLVVPDKSRYVDQQTLKLQENPEDVPPGELPRNLLLSVDRHLVQTVVPGARLSIMGIYSVYQASNSSTSHKGAVAVRQPYIRVVGIEETNETQSRGPAAYTQDEIEEFKKFAAEPDAYKNICSKIAPSIFGHDDVKKAVACLLFGGSRKHLPDGVRLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIQDSSTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDVRMYSQDKIIANHIIKVHASAGRAGALMGESKTSKEENWLKRYLQYCRNECHPRLSESATTLLQNHYVKIRQDMRKQSNETGEAAAIPITVRQLEAIVRLSEALAKMKLSHLATEENVQEAVRLFTVSTMDAAKSGINQQINLTPDMANEIKQAETQIKRRIGIGNHISERRLIDDLSRMGMNESIVRRALIIMHQRDEIEYKRERRVVFRKA 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4388g00004 735 Gene3D - 139 274 IPR012340 -
Vium4388g00004 735 FunFam DNA helicase 311 665 - -
Vium4388g00004 735 Pfam MCM N-terminal domain 38 109 IPR027925 -
Vium4388g00004 735 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 166 178 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Vium4388g00004 735 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 645 662 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Vium4388g00004 735 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 140 155 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Vium4388g00004 735 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 290 302 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Vium4388g00004 735 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 569 584 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Vium4388g00004 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 340 651 IPR027417 -
Vium4388g00004 735 Gene3D - 32 115 - -
Vium4388g00004 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 459 472 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium4388g00004 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 371 386 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium4388g00004 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 431 445 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium4388g00004 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 483 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium4388g00004 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 510 518 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium4388g00004 735 Pfam MCM OB domain 139 274 IPR033762 -
Vium4388g00004 735 CDD MCM5 333 650 - -
Vium4388g00004 735 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 35 693 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vium4388g00004 735 FunFam DNA helicase 31 119 - -
Vium4388g00004 735 SUPERFAMILY Nucleic acid-binding proteins 39 296 IPR012340 -
Vium4388g00004 735 ProSiteProfiles MCM family domain profile. 330 536 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium4388g00004 735 Pfam MCM AAA-lid domain 561 650 IPR041562 -
Vium4388g00004 735 Gene3D - 166 224 - -
Vium4388g00004 735 Gene3D - 311 669 IPR027417 -
Vium4388g00004 735 SMART mcm 135 652 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vium4388g00004 735 ProSitePatterns MCM family signature. 439 447 IPR018525 GO:0003677|GO:0005524|GO:0006260
Vium4388g00004 735 FunFam DNA helicase 166 224 - -
Vium4388g00004 735 Pfam MCM P-loop domain 318 540 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4388g00004 Vium-Chr4388 24029 29831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4388g00004 1 735 Core DNA Replication Machinery Family AT2G07690 77.007 0.0 1180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4388g00004 K02209 - gmx:100779483 1356.66