Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4388g00003 ATGAAGCCACAGAAACTCACCGACTACGAGCTCCAGCGGCTCCAGAACATTCGCCGGAACAATGAGATGATGGCGGCCCTCAAACTCCATTCCAAAGCCACCCAACTCTCCAATTTCAAGCGTCAAAGAGTTGAAGCCAAATCCACCCGCGTGAAATTGGAAAAGAAACCTAAAACCGAAACCCCAATTGTCATCAGTGTCAGACGCTCCCTGCGAACCAGAGGTATTCCACCAGATTGTGAGGGTCTTAACAGAGATTCCGTGGCCCCCACCACTCTCTCCAGAGAAACACCACCTCCTGTCTCCACCACTCGCTCCAAAGAAAAACCACCTTCCGTCTCAAGTTTGGGTCCCCTTTCCATGGCCACTGCTCGTGCAAGCGCTCACTCTGATAGTTCATTCATTGAGTCGCTAATGGGTATGGCCCAAGATGTCAGTGTTCCAAAAGGGAATGCGGGGGATTCCCTTGAATTGGAATCTCTGTCTTTGTATTTCGACAATATTGCGCGGGTTGTTTCTGGAAGGATTACCAATGTCAGGTTTTTTCCTACCAACAGTGTCAAAATGATTGCCGCGGGTAACAAGTTTGGGAATATTGGGTTCTGGAATATGGGAGAAAGTGAGGTTCATTTATACCGTCCTCATAATGCTCCCATTTCTGGGATTTTGATTCAATCACATTGTTGTTCAAAGATATACACAAGTTGCTATGATGGAATTCTTCGGCTAATGGATGCTGAGAAGGAAATCTTTGATCTGGTGTTTGAGAGTGATGAAACAATATATGCTCTTTCTCAACCACCAAATGAGACAAACTGCCTATATCTTGCTGAGGGTTCTGGAGGTTTGACTATGTGGGATAACAGGGTGGGAAAACTTTCGTCGCACTGGGATTTGCATGACAGTAGGATTAACACGATAGATTTCAACTGTCAAAACCCTCACATTGTAGCTACTAGTTCCTCTGATGCAACTGCCTGCACCTGGGACTTGAGATATACTAATAGGAATGACCTCACAGCTTTGAGGACAGTTACCCACAAAAGATCTGTCCATTCTGCTTACTTCTCTCCTTCTGGAGGTAGCCTTGCAACTACAAGCTTGGACAATACTATTGGAATTTACAGTGGAGTTAACTTGGAGGATTCGGCTGTTATTTCTCATTTCAATCAGACTGGCAGATGGCTTTCTACATTCAGAGCGAAATGGGGTTGGGATGACAAATATCTCTTCATTGGAAATATGAATAGAGGGGTTGATGTGGTTTCAGCAGTTCAAAGGAAAATAGTTATGACGTTAGAAAGCCCACACATGTCTGCCATTCCTTGCAGATTCGATATAAACTCTTACGAGGTTGGGATGCTTGTAGGAGCTACAAGTGGAGGCCAGCTTTATGTCTGGACATCACGCTAG 1413 0.4508 MKPQKLTDYELQRLQNIRRNNEMMAALKLHSKATQLSNFKRQRVEAKSTRVKLEKKPKTETPIVISVRRSLRTRGIPPDCEGLNRDSVAPTTLSRETPPPVSTTRSKEKPPSVSSLGPLSMATARASAHSDSSFIESLMGMAQDVSVPKGNAGDSLELESLSLYFDNIARVVSGRITNVRFFPTNSVKMIAAGNKFGNIGFWNMGESEVHLYRPHNAPISGILIQSHCCSKIYTSCYDGILRLMDAEKEIFDLVFESDETIYALSQPPNETNCLYLAEGSGGLTMWDNRVGKLSSHWDLHDSRINTIDFNCQNPHIVATSSSDATACTWDLRYTNRNDLTALRTVTHKRSVHSAYFSPSGGSLATTSLDNTIGIYSGVNLEDSAVISHFNQTGRWLSTFRAKWGWDDKYLFIGNMNRGVDVVSAVQRKIVMTLESPHMSAIPCRFDINSYEVGMLVGATSGGQLYVWTSR 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4388g00003 470 ProSitePatterns Trp-Asp (WD) repeats signature. 317 331 IPR019775 -
Vium4388g00003 470 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 376 IPR001680 GO:0005515
Vium4388g00003 470 MobiDBLite consensus disorder prediction 87 122 - -
Vium4388g00003 470 PANTHER UNCHARACTERIZED 4 469 - -
Vium4388g00003 470 Gene3D - 167 470 IPR015943 GO:0005515
Vium4388g00003 470 MobiDBLite consensus disorder prediction 74 122 - -
Vium4388g00003 470 SMART WD40_4 338 376 IPR001680 GO:0005515
Vium4388g00003 470 SMART WD40_4 205 245 IPR001680 GO:0005515
Vium4388g00003 470 SMART WD40_4 290 330 IPR001680 GO:0005515
Vium4388g00003 470 SUPERFAMILY WD40 repeat-like 171 467 IPR036322 GO:0005515
Vium4388g00003 470 Coils Coil 36 56 - -
Vium4388g00003 470 FunFam WD repeat-containing protein 76 167 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4388g00003 Vium-Chr4388 1223 4056 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4388g00003 6 421 U-box Gene Family AT1G04510 20.621 2.70e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4388g00003 K24755 - gmx:100800122 718.768