Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4388g00002 ATGAAGCCACAGAAACTCACCGACTACGAGCTCCAGCGGCTCCAGAACATTCGCCGGAACAATGAGATGATGGCGGCCCTCAAACTCCATTCCAAAGCCACCCAACTCTCCAATTTCAAGCGTCAAAGAGTTGAAGCCAAATCCACCCGCGTGAAATTGGAAAAGAAACCTAAAACCGAAATCCCAATTAAAACCGAAACCCCAATTAAAACCGAAACCCCAATTGTCATCAGTGTCAGACGCTCCCTGCGAACCAGAGGTATTCCACCAGATTGTGAGGGTCTTAACAGAGATTCCGTGGCCCCCACCACTCTCTCCAGAGAAACACCACCTCCTGTCTCCACCACTCGCTCCAAAGAAAAACCACCTTCCGTCTCAAGTTTGGGTCCCCTTTCCATGGCCACTGCTCGTGCAAGCGCTCACTCTGATAGTTCATTCATTGAGTCGCTAATGGGTATGGCCCAAGATGTCAGTGTTCCAAAAGGGAATGCGGGGGATTCCCTTGAATTGGAATCTCTGTCTTTGTATTTCGACAATATTGCGCGGGTTGTTTCTGGAAGGATTACCAATGTCAGGTTTTTTCCTACCAACAGTGTCAAAATGATTGCCGCGGGTAACAAGTTTGGGAATATTGGGTTCTGGAATATGGGAGAAAGTGAGGTTCATTTATACCGTCCTCATAATGCTCCCATTTCTGGGATTTTGATTCAATCACATTGTTGTTCAAAGATATACACAAGTTGCTATGATGGAATTCTTCGGCTAATGGATGCTGAGAAGGAAATCTTTGATCTGGTGTTTGAGAGTGATGAAACAATATATGCTCTTTCTCAACCACCAAATGAGACAAACTGCCTATATCTTGCTGAGGGTTCTGGAGGTTTGACTATGTGGGATAACAGGGTGGGAAAACTTTCGTCGCACTGGGATTTGCATGACAGTAGGATTAACACGATAGATTTCAACTGTCAAAACCCTCACATTGTAGCTACTAGTTCCTCTGATGCAACTGCCTGCACCTGGGACTTGAGATATACTAATAGGAATGACCTCACAGCTTTGAGGACAGTTACCCACAAAAGATCTGTCCATTCTGCTTACTTCTCTCCTTCTGGAGGTAGCCTTGCAACTACAAGCTTGGACAATACTATTGGAATTTACAGTGGAGTTAACTTGGAGGATTCGGCTGTTATTTCTCATTTCAATCAGACTGGCAGATGGCTTTCTACATTCAGAGCGAAATGGGGTTGGGATGACAAATATCTCTTCATTGGAAATATGAATAGAGGGGTTGATGTGGTTTCAGCAGTTCAAAGGAAAATAGTTATGACGTTAGAAAGCCCACACATGTCTGCCATTCCTTGCAGATTCGATATAAACTCTTACGAGGTTGGGATGCTTGTAGGAGCTACAAGTGGAGGCCAGCTTTATGTCTGGACATCACGCTAG 1449 0.4486 MKPQKLTDYELQRLQNIRRNNEMMAALKLHSKATQLSNFKRQRVEAKSTRVKLEKKPKTEIPIKTETPIKTETPIVISVRRSLRTRGIPPDCEGLNRDSVAPTTLSRETPPPVSTTRSKEKPPSVSSLGPLSMATARASAHSDSSFIESLMGMAQDVSVPKGNAGDSLELESLSLYFDNIARVVSGRITNVRFFPTNSVKMIAAGNKFGNIGFWNMGESEVHLYRPHNAPISGILIQSHCCSKIYTSCYDGILRLMDAEKEIFDLVFESDETIYALSQPPNETNCLYLAEGSGGLTMWDNRVGKLSSHWDLHDSRINTIDFNCQNPHIVATSSSDATACTWDLRYTNRNDLTALRTVTHKRSVHSAYFSPSGGSLATTSLDNTIGIYSGVNLEDSAVISHFNQTGRWLSTFRAKWGWDDKYLFIGNMNRGVDVVSAVQRKIVMTLESPHMSAIPCRFDINSYEVGMLVGATSGGQLYVWTSR 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4388g00002 482 Gene3D - 179 482 IPR015943 GO:0005515
Vium4388g00002 482 FunFam WD repeat-containing protein 76 179 481 - -
Vium4388g00002 482 ProSitePatterns Trp-Asp (WD) repeats signature. 329 343 IPR019775 -
Vium4388g00002 482 MobiDBLite consensus disorder prediction 99 134 - -
Vium4388g00002 482 PANTHER UNCHARACTERIZED 4 481 - -
Vium4388g00002 482 MobiDBLite consensus disorder prediction 86 134 - -
Vium4388g00002 482 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 388 IPR001680 GO:0005515
Vium4388g00002 482 SMART WD40_4 217 257 IPR001680 GO:0005515
Vium4388g00002 482 SMART WD40_4 350 388 IPR001680 GO:0005515
Vium4388g00002 482 SMART WD40_4 302 342 IPR001680 GO:0005515
Vium4388g00002 482 Coils Coil 36 56 - -
Vium4388g00002 482 SUPERFAMILY WD40 repeat-like 183 479 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4388g00002 Vium-Chr4388 1221 4056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4388g00002 6 433 U-box Gene Family AT1G04510 19.869 9.72e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4388g00002 K24755 - gmx:100800122 709.909