Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4384g00004 ATGGGTTCGGTTCTGCCAGAACTGAGCTTGGATTTAAGACCCTCTTTTGTCCCTAAAACCATCACCGATTTTCTCCGTCACCTCTCTTCCGCCACCGACAGACTCGCCACTCTTCACGATTTCCTGTCTCGCTTGGAAGACGAGCTCCGCAAGATCCACGCCTTCAAGCGCGAGCTTCCTCTCTCCATGCTCCTCTTAAACGACGCAATTTCACTCCTCAAAACGGAATCGCAGAAATGCCGGCTGCGTGATTCTTCACCGGTGTTGGAGGAGTTCATCCCTTTGAAGAAAGAACGTGATCGGAATGAAGGAAATAACTATAATGATAATGACATGGATAACGAATGCAGAGATAAGAAGAATTGGTTGAGTTCGGTGCAGCTTTGGAATAACAGTACTACTAATAACTATGCATCTGATCGGAAACATCAACAACTGCATACATTAGAAAATAAGAAAATTGAGGAAGGGCAATCTGTTGGTGAGGATCCTTTTCAGTCGTGCAGCAATAGAAATGGGGGAAGAAGGGCTTTTATGCCTTTCTCCAGGTACTCTTCTTCTTCATCTTCTGTGCCGGTGGCAACGGCGGGACTGGCTGCTGCAACCAAAGAAGAGAAGGAAGAGAGTGTTATGAATAGGCTTTCCCTTCAGACCCCTTCTGTGAAAGAGGGGTGTGGTTCAAGGGGATCCAGAAGCAGTTCCAGTAGGGCTGTTTCTTCTTCTCCTCCTACGGTGCACCCCAGTTTGAGGGCATCATCGCTTCAGCAGACTGCGAGAAAACAGAGGAGATGCTGGTCCCCTGAATTGCACAGACGATTTGTTAATGCTTTGCAGAAACTAGGAGGTTCCCAAGCGGCAACACCAAAGCAAATTAGAGAGCTGATGCAGGTTGATGGCCTGACTAACGATGAGGTGAAAAGTCACTTACAAAAATACCGACTTCATACGCGGAGAGTTCCAGCAGGAAGTGGTAATCAGCCAGTTGTTGTTCTTGGAGGTTTGTGGATGTCTCAAGATCAGTACAACGACTCCTCAAAAGTTAGCAGTTCAGGGTCAGGTTCTCCTCAAAGTCCCCTTCATTTGACTACAGGGTCTCGAGGAGGAACGTCCCCAACTGAGGGTGACAGCATGGAAGATGATGAAGATGCAAGATCCGAGAGTTATAGTTGGAAAAGTCATATGCAAAAACCTGGAAAAGTTGATGTATAG 1209 0.4698 MGSVLPELSLDLRPSFVPKTITDFLRHLSSATDRLATLHDFLSRLEDELRKIHAFKRELPLSMLLLNDAISLLKTESQKCRLRDSSPVLEEFIPLKKERDRNEGNNYNDNDMDNECRDKKNWLSSVQLWNNSTTNNYASDRKHQQLHTLENKKIEEGQSVGEDPFQSCSNRNGGRRAFMPFSRYSSSSSSVPVATAGLAAATKEEKEESVMNRLSLQTPSVKEGCGSRGSRSSSSRAVSSSPPTVHPSLRASSLQQTARKQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPAGSGNQPVVVLGGLWMSQDQYNDSSKVSSSGSGSPQSPLHLTTGSRGGTSPTEGDSMEDDEDARSESYSWKSHMQKPGKVDV 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4384g00004 402 SUPERFAMILY Homeodomain-like 257 318 IPR009057 -
Vium4384g00004 402 MobiDBLite consensus disorder prediction 212 260 - -
Vium4384g00004 402 Gene3D - 259 317 - -
Vium4384g00004 402 MobiDBLite consensus disorder prediction 341 372 - -
Vium4384g00004 402 MobiDBLite consensus disorder prediction 202 260 - -
Vium4384g00004 402 Pfam Myb-like DNA-binding domain 262 313 IPR001005 -
Vium4384g00004 402 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 392 IPR044787 GO:0003700|GO:0006355
Vium4384g00004 402 FunFam Myb family transcription factor 259 317 - -
Vium4384g00004 402 NCBIfam myb-like DNA-binding domain, SHAQKYF class 260 315 IPR006447 GO:0003677
Vium4384g00004 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 257 317 IPR017930 -
Vium4384g00004 402 MobiDBLite consensus disorder prediction 341 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4384g00004 Vium-Chr4384 51044 53658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4384g00004 7 336 G2-like Transcription Factor Family AT2G03500 39.886 2.36e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium4384g00004 Myb_DNA-binding 3.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4384g00004 - - gmx:100812420 623.239