Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4384g00003 ATGGCTGTTGGGCCAGGAATGGATATGCCGATCATGCATGACAGTGATCGCTACGAACTCCTGCGTGACATTGGTTCTGGCAACTTCGGTGTAGCAAGGCTCATGAGGGACAAGCTCACCGAGGAACTTGTTGCTGTTAAGTATATTGAGAGAGGTGAAAAGATAGATGAAAATGTACAGAGAGAAATTATAAATCACAGATCTCTGAGGCATCCTAATATTGTGAGGTTCAAGGAGGTTATATTGACACCAACACATTTGGCAATTGTAATGGAATATGCTTCTGGAGGAGAGCTATTTGAGCGAATATGCAATGCAGGGCGATTCAGTGAGGATGAGGCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTATTGTCATGCAATGCAAGTATGCCATCGAGACTTGAAGTTGGAAAACACATTGTTGGATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGCTATTCAAAGTCCTCAGTGCTACATTCTCAACCAAAATCTACAGTGGGAACCCCTGCATATATCGCTCCAGAAGTTTTGCTTAATAAGGAATATGATGGCAAGATTGCAGATGTGTGGTCTTGTGGGGTGACCTTTTATGTCATGTTGGTGGGAGCATATCCATTTGAGGATCCCGAGGAACCTAAAAATTTCCGCAAGACAATACATAGGATTTTGAATGTTCAGTACTCAATTCCAGACTATGTTCATATATCTCCCGAGTGCCGTCATCTGATATCAAGGATTTTTGTTGCTGATCCTGCAAAAAGAATAAGTATTCCTGAAATTAGAAACCACGAGTGGTTTTTGAAGAACCTTCCAAGTGATCTGATGGATGGGAATAGCAACAACCATTTTGAGGAGCCTGATCAACCAATGCAAAGCATTGAAGAAATCATGCAGATAATCAGAGAGGCTACAATTCCTGCAGCTGGATCTCAGTCTCCCAACCATGATCTTACTGGTAGCTTGGATATTGATGAGGACATGGATACAGATCCTGATCTTGACTTAGATAGCAGTGGAGAAATAGTGTATGCCATGTAA 1062 0.4209 MAVGPGMDMPIMHDSDRYELLRDIGSGNFGVARLMRDKLTEELVAVKYIERGEKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLNKEYDGKIADVWSCGVTFYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYSIPDYVHISPECRHLISRIFVADPAKRISIPEIRNHEWFLKNLPSDLMDGNSNNHFEEPDQPMQSIEEIMQIIREATIPAAGSQSPNHDLTGSLDIDEDMDTDPDLDLDSSGEIVYAM 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4384g00003 353 Gene3D Transferase(Phosphotransferase) domain 1 94 282 - -
Vium4384g00003 353 FunFam Serine/threonine-protein kinase SRK2E 94 282 - -
Vium4384g00003 353 MobiDBLite consensus disorder prediction 313 346 - -
Vium4384g00003 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Vium4384g00003 353 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Vium4384g00003 353 ProSiteProfiles Protein kinase domain profile. 18 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4384g00003 353 PANTHER SERINE/THREONINE KINASE 17 299 - -
Vium4384g00003 353 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Vium4384g00003 353 FunFam Serine/threonine-protein kinase SRK2E 9 93 - -
Vium4384g00003 353 SUPERFAMILY Protein kinase-like (PK-like) 11 300 IPR011009 -
Vium4384g00003 353 CDD STKc_SnRK2-3 17 273 - -
Vium4384g00003 353 Pfam Protein kinase domain 18 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4384g00003 353 SMART serkin_6 18 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4384g00003 Vium-Chr4384 26368 29661 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4384g00003 17 280 CBL-interacting serine-threonine protein kinases AT5G25110 44.727 6.85e-69 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vium4384g00003 Pkinase 1.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4384g00003 K14498 - gmx:100796253 672.159