Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4384g00002 ATGGCTGTTGGGCCAGGAATGGATATGCCGATCATGCATGACAGTGATCGCTACGAACTCCTGCGTGACATTGGTTCTGGCAACTTCGGTGTAGCAAGGCTCATGAGGGACAAGCTCACCGAGGAACTTGTTGCTGTTAAGTATATTGAGAGAGGTGAAAAGGTTATATTGACACCAACACATTTGGCAATTGTAATGGAATATGCTTCTGGAGGAGAGCTATTTGAGCGAATATGCAATGCAGGGCGATTCAGTGAGGATGAGGCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTATTGTCATGCAATGCAAGTATGCCATCGAGACTTGAAGTTGGAAAACACATTGTTGGATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGCTATTCAAAGTCCTCAGTGCTACATTCTCAACCAAAATCTACAGTGGGAACCCCTGCATATATCGCTCCAGAAGTTTTGCTTAATAAGGAATATGATGGCAAGATTGCAGATGTGTGGTCTTGTGGGGTGACCTTTTATGTCATGTTGGTGGGAGCATATCCATTTGAGGATCCCGAGGAACCTAAAAATTTCCGCAAGACAATACATAGGATTTTGAATGTTCAGTACTCAATTCCAGACTATGTTCATATATCTCCCGAGTGCCGTCATCTGATATCAAGGATTTTTGTTGCTGATCCTGCAAAAAGAATAAGTATTCCTGAAATTAGAAACCACGAGTGGTTTTTGAAGAACCTTCCAAGTGATCTGATGGATGGGAATAGCAACAACCATTTTGAGGAGCCTGATCAACCAATGCAAAGCATTGAAGAAATCATGCAGATAATCAGAGAGGCTACAATTCCTGCAGCTGGATCTCAGTCTCCCAACCATGATCTTACTGGTAGCTTGGATATTGATGAGGACATGGATACAGATCCTGATCTTGACTTAGATAGCAGTGGAGAAATAGTGTATGCCATGTAA 987 0.4265 MAVGPGMDMPIMHDSDRYELLRDIGSGNFGVARLMRDKLTEELVAVKYIERGEKVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLNKEYDGKIADVWSCGVTFYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYSIPDYVHISPECRHLISRIFVADPAKRISIPEIRNHEWFLKNLPSDLMDGNSNNHFEEPDQPMQSIEEIMQIIREATIPAAGSQSPNHDLTGSLDIDEDMDTDPDLDLDSSGEIVYAM 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4384g00002 328 ProSitePatterns Serine/Threonine protein kinases active-site signature. 108 120 IPR008271 GO:0004672|GO:0006468
Vium4384g00002 328 FunFam Serine/threonine-protein kinase SRK2E 69 257 - -
Vium4384g00002 328 Gene3D Phosphorylase Kinase; domain 1 1 56 - -
Vium4384g00002 328 MobiDBLite consensus disorder prediction 288 321 - -
Vium4384g00002 328 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Vium4384g00002 328 Gene3D Transferase(Phosphotransferase) domain 1 69 257 - -
Vium4384g00002 328 SMART serkin_6 18 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4384g00002 328 Pfam Protein kinase domain 55 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4384g00002 328 SUPERFAMILY Protein kinase-like (PK-like) 11 275 IPR011009 -
Vium4384g00002 328 ProSiteProfiles Protein kinase domain profile. 18 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4384g00002 328 PANTHER SERINE/THREONINE KINASE 17 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4384g00002 Vium-Chr4384 26368 29661 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4384g00002 11 259 CBL-interacting serine-threonine protein kinases AT4G24400 39.576 4.22e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vium4384g00002 Pkinase 1.2e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4384g00002 K14498 - gmx:100796253 612.453