Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4380g00001 ATGGCTGCGAATTCTGGGAACATGTCATTTGCATCGTCTCAATCTGGTTCACAGGCCCATGGGGATACTGATTCTGTCCACGTTGCAGTGTGTTCCCTTTGTGATAAGGCCCTATCACATGATAATGAGATGGCAAGCGATCTTGCTAGCCATGGTGTGTGCGGCGATTGTAAATTTTTGTTACTTGAAGACTTTGGGAATCATACATTTACCCAAAGTTCACGAAGGAGGCTTAGAGGAAGATTCAGGCACTACAGTTCTGAATCCGTGGATAATAGTTTCTCACAGCAGATCCCTCATGTGCATAGTATGGTGAGACAATATGAATCACTTGCCTCTGGAGAGGATGATCAACTTGTGGATGGTGACACCCCTGCTTGGTCAATGCAATATGTTAGTACACACACTACCCCAAGTGGGTCTAGAAGGTGGAGGCATGTTCTGTCTGACACTGACAGTGATGGTTTTGATAATTGGACTTCTCTTTATGGTGAAAATGAATCAAGTGTGAGTTTTAGACGGTACAGGGTTCCCCATGATGATGAGATAGAGTCTTTCTCTGCTTATGGAGGCGACTCAGATATTTCTATGGATACTCATAGTTTTGTAGGCAATGGACTCTTTAATTTGCCAGATGAGGGAGATGAGGGAGATGAGTTCGATAGTGACACTGACATTGATCCAATGCATGCTGGCCATGGCCAATGGATTTCAGATGAAGATGATGAAGAAGAGGATGCAGATGGGGAGGTGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAATGATGATGATTATGATGAAGAGGAGGAGGATAGGGAATGGGAATTAGCTGAGGCTGAGGAAGCTGAAGCCACAGCCCGCCTTCAAATTTTTTTCACCTCAAGTCCAAGTGAGAGCGCAGATCGCAACAATTGGGAACAGAGGTTTAATTCTACTGAATCTGAGGGAATGTTTAGCCATATAATCAGGGATACTTGGCAAGCTTTTGAGGATGTTGATTTACCTCATGGAGCAAACTTTGGGGATTATCTTGATGCTAGACGTTTCGAAGATCTACTTGAGCATCTTGCTGAGAATGACAACTCAAGACGAGGAGCACCTCCCGCGGCCGTGTCTTTCACGAAAAATCTGCCACGTGTAGTCATTGGCAAAGAACATGAGAAGAATGATGAACTAGTTTGTGCCATTTGCAAGGATGTCCTGGCACCTGGCACTGAAGTAAATCAACTTCCTTGTTCTCACCTTTATCACATTGATTGCATTTTGCCATGGTTGAGTGCACGGAATTCATGCCCTCTTTGTCGTTATGAGCTTCCAACCGATGATAAGGATTATGAAGAAGGAAAGCAGAACATTGATGGTAGAAATGTGATCCATGAGAGGCAGCAAATGGATGTAATAGATGATAGTTCCTCTGATGTTTCTGATGGAGATGAGTTGAATGAAGAGAATGGTAGTAGTCAAGATGTTAGCTCAGGTTCTACAGCAATTTCTTCTACAAGAAGAAGTGGTAGAGGAAGATGGCTTTTTCTTGCTGCAGCTCCAATTGTTAGTTTAGTGGGCATTGTTCTTGTATTGTGGTTAGGCAATAACTCTGAAATTGAGGGAAATAGACATCTGGGCAGTCATTACTTATCCGGGCAAAATCAACATGCTTATGCATCTCCAAACCAGAGGGATAGTAGAAGCAGAAGATGGTGGTGCCCATTTTAA 1731 0.4339 MAANSGNMSFASSQSGSQAHGDTDSVHVAVCSLCDKALSHDNEMASDLASHGVCGDCKFLLLEDFGNHTFTQSSRRRLRGRFRHYSSESVDNSFSQQIPHVHSMVRQYESLASGEDDQLVDGDTPAWSMQYVSTHTTPSGSRRWRHVLSDTDSDGFDNWTSLYGENESSVSFRRYRVPHDDEIESFSAYGGDSDISMDTHSFVGNGLFNLPDEGDEGDEFDSDTDIDPMHAGHGQWISDEDDEEEDADGEVEEEEEEEEEEEEEEENDDDYDEEEEDREWELAEAEEAEATARLQIFFTSSPSESADRNNWEQRFNSTESEGMFSHIIRDTWQAFEDVDLPHGANFGDYLDARRFEDLLEHLAENDNSRRGAPPAAVSFTKNLPRVVIGKEHEKNDELVCAICKDVLAPGTEVNQLPCSHLYHIDCILPWLSARNSCPLCRYELPTDDKDYEEGKQNIDGRNVIHERQQMDVIDDSSSDVSDGDELNEENGSSQDVSSGSTAISSTRRSGRGRWLFLAAAPIVSLVGIVLVLWLGNNSEIEGNRHLGSHYLSGQNQHAYASPNQRDSRSRRWWCPF 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4380g00001 576 Coils Coil 237 291 - -
Vium4380g00001 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 360 447 IPR013083 -
Vium4380g00001 576 MobiDBLite consensus disorder prediction 450 473 - -
Vium4380g00001 576 CDD RING-H2_PA-TM-RING 399 441 - -
Vium4380g00001 576 FunFam E3 ubiquitin-protein ligase RING1-like isoform A 360 447 - -
Vium4380g00001 576 ProSiteProfiles Zinc finger RING-type profile. 400 441 IPR001841 -
Vium4380g00001 576 MobiDBLite consensus disorder prediction 1 21 - -
Vium4380g00001 576 MobiDBLite consensus disorder prediction 450 506 - -
Vium4380g00001 576 Pfam Ring finger domain 400 441 IPR001841 -
Vium4380g00001 576 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 255 445 - -
Vium4380g00001 576 SMART ring_2 400 440 IPR001841 -
Vium4380g00001 576 MobiDBLite consensus disorder prediction 490 506 - -
Vium4380g00001 576 MobiDBLite consensus disorder prediction 206 283 - -
Vium4380g00001 576 MobiDBLite consensus disorder prediction 238 283 - -
Vium4380g00001 576 SUPERFAMILY RING/U-box 382 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4380g00001 Vium-Chr4380 15638 18707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4380g00001 13 576 C3H Transcription Factor Family AT5G01980 42.249 9.32e-114 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4380g00001 - - pvu:PHAVU_008G078700g 918.302