Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium437g00020 ATGCAACATTCTCACAAACTCTTTCCCACCATTCTCTTTCTCTTTTCCTTCTTTTCTTCAACACTCTCCGACCTCTCGTCGGAGCGCGCGGCGCTCCTCGCCCTGCGCTCCGCCGTGCGCGGCCGTACGCTCCTCTGGAACACCACCTTCCGCTCGCCTTGCGTCTGGCCCGGCGTCCAATGCGATGCCGCCAATGCCACCGTGGTGGAGCTTCACCTCCCTGCCGTCGCTCTCTCCGGCGAGCTTCCGGACGGTGTGTTCCCGGAGCTCCCCAACCTCCACACCCTCAGCCTCCGCGTCAACTCCCTCTCTGGCGCCCTCCCGGCCGACCTTGCTGCCTGCACCGCCCTCCGCAACCTATTCCTCCAACAGAACCACTTCGCCGGCGAGGTGCCGGCGTTTCTCTCCGGCATGACTGGCCTCGTCCGGCTCAATTTGGCCTCCAACAACTTTTCCGGCCCATTTCCGGCCCGGTTCGGGAACCTCACCCGGTTGAGGACCCTTTTCCTTGAGAATAATCGGCTCACTGGTTCCATACCCGGTTTGGAGGAACTCGGTGAATTGGCTCAGTTTAATGTCTCTTACAACATGTTAAACGGTTCTGTTCCTAAAAAGTTGCAGACTTTTGATAAAGATTCGTTTTTGGGCAATACCCTTTGTGGGAAGCCACTTGGGATTTGTCCCTGGGATGATGGAGGTGGCGAGAGTGGTGTAAATGGGAGTTCAAATTCAAGTGGGGTTGGAGGAGGTGGAGGGAGTGTGATTGGAGGGGGAAAGAAGAAGGGGAAGCTTTCTGGGGGTGCAATTGCAGGGATTGTTGTTGGGTGCGTGGTGGCACTTTTGTTGGTTCTCTTTGCTTTGATTATTTTGTGTAGAAGCGGGAACAAGACTAGGAGTGTTGATAATGTTAGCAACGTGGTGGGCTTGAAGGAGGAACCTCAACAGCATGGGGAGGTGGGAATTGAGGGTGGTAATGTGGAGAGTGGTGGTGGTGCTGGTGGTGGTGGGGATTCGGTGGCCGCAGCGGCGGCGGCGGCGGCAGTGGCGGCAGTGGGTGGGAATGGAGTTGGCGGTGGAAGTGGTGGAGATAAGAAGTTGGTGTTTTATGGGAATAAAGTGAAGGTGTTTGATTTGGAGGATTTGCTAAGGGCTTCTGCAGAGGTGTTGGGAAAAGGAACTTTTGGGACCACCTATAAGGCTGTTTTAGAGGAAGGGCCTGTGGTGGCTGTGAAGAGGCTGAGGGATGTGACGGTTTCGGAGAAGGAGTTTAAGGAGAAGATTGATGGGGTGGGAGTGATGGATCATGAGAATTTGGTGCCTCTCAGGGCTTACTATTATAGCAGGGACGAGAAGCTTCTTGTTCATGATTACATGCCAATGGGAAGCCTATCTGCAATTTTGCATGGTGAGTTCAGCCTCACTTTAATTCTCAAACCAAAAGCACACATAACAACAATGCAACATTCTCACAAACTCTTTCCCACCATTCTCTTTCTCTTTTCCTTCTTTTCTTCAACACTCTCCGACCTCTCGTCGGAGCGCGCGGCGCTCCTCGCCCTGCGCTCCGCCGTGCGCGGCCGTACGCTCCTCTGGAACACCACCTTCCGCTCGCCTTGCGTCTGGCCCGGCGTCCAATGCGATGCCGCCAATGCCACCGTGGTGGAGCTTCACCTCCCTGCCGTCGCTCTCTCCGGCGAGCTTCCGGACGGTGTGTTCCCGGAGCTCCCCAACCTCCACACCCTCAGCCTCCGCGTCAACTCCCTCTCTGGCGCCCTCCCGGCCGACCTTGCTGCCTGCACCGCCCTCCGCAACCTATTCCTCCAACAGAACCACTTCGCCGGCGAGGTGCCGGCGTTTCTCTCCGGCATGACTGGCCTCGTCCGGCTCAATTTGGCCTCCAACAACTTTTCCGGCCCATTTCCGGCCCGGTTCGGGAACCTCACCCGGTTGAGGACCCTTTTCCTTGAGAATAATCGGCTCACTGGTTCCATACCCGGTTTGGAGGAACTCGGTGAATTGGCTCAGTTTAATGTCTCTTACAACATGTTAAACGGTTCTGTTCCTAAAAAGTTGCAGACTTTTGATAAAGATTCGTTTTTGGGCAATACCCTTTGTGGGAAGCCACTTGGGATTTGTCCCTGGGATGATGGAGGTGGCGAGAGTGGTGTAAATGGGAGTTCAAATTCAAGTGGGGTTGGAGGAGGTGGAGGGAGTGTGATTGGAGGGGGAAAGAAGAAGGGGAAGCTTTCTGGGGGTGCAATTGCAGGGATTGTTGTTGGGTGCGTGGTGGCACTTTTGTTGGTTCTCTTTGCTTTGATTATTTTGTGTAGAAGCGGGAACAAGACTAGGAGTGTTGATAATGTTAGCAACGTGGTGGGCTTGAAGGAGGAACCTCAACAGCATGGGGAGGTGGGAATTGAGGGTGGTAATGTGGAGAGTGGTGGTGGTGCTGGTGGTGGTGGGGATTCGGTGGCCGCAGCGGCGGCGGCGGCGGCAGTGGCGGCAGTGGGTGGGAATGGAGTTGGCGGTGGAAGTGGTGGAGATAAGAAGTTGGTGTTTTATGGGAATAAAGTGAAGGTGTTTGATTTGGAGGATTTGCTAAGGGCTTCTGCAGAGGTGTTGGGAAAAGGAACTTTTGGGACCACCTATAAGGCTGTTTTAGAGGAAGGGCCTGTGGTGGCTGTGAAGAGGCTGAGGGATGTGACGGTTTCGGAGAAGGAGTTTAAGGAGAAGATTGATGGGGTGGGAGTGATGGATCATGAGAATTTGGTGCCTCTCAGGGCTTACTATTATAGCAGGGACGAGAAGCTTCTTGTTCATGATTACATGCCAATGGGAAGCCTATCTGCAATTTTGCATGGAAACAAAGGAGCCGGTAGGACACCGTTGAATTGGGAAATGAGATCAGACATTGCATTAGGAGCTGCTCGTGGCATCGAGTACCTACATTCACAGGGGCCTAGTGTTTCTCATGGAAACATAAAGTCCTCCAACATCCTCCTAAGCAAATCCTATGATGCCAAGGTGTCTGATTTTGGGCTTGCACACCTTGTTGGCCCCTCATCCACACCCAACAGGGTGGCCGGCTACCGTGCCCCCGAAGTAACCGATCCACGGCGAGTTTCTCAGAAGGCTGATGTATACAGCTTTGGAGTGTTGCTCTTGGAACTTCTGACTGGAAAGGCTCCTACACATACCCTCTTGAATGAGGAAGGAGTGGACCTTCCGAGATGGGTCCAATCAGTGGTTAGAGAGGAATGGAGTTCAGAGGTGTTTGATATTGAACTCCTTAGGTATCAGAATTCTGAAGAGGAAATGGTTCAGTTGTTGCAACTTGCAGTGGATTGTGTAGTTCCATACCCTGGAAACCGCCCTTCAATGTCTCAAGTGAGACAACGCATGGAAGAGTTTCGTAGGTCTAGTAGTACCATGAAAGAGGGTACTCAAGACCAAATCCATCAACCTGATTTGATCGATGATCTAGAAGATGTGTCATCTAGATGA 3504 0.5311 MQHSHKLFPTILFLFSFFSSTLSDLSSERAALLALRSAVRGRTLLWNTTFRSPCVWPGVQCDAANATVVELHLPAVALSGELPDGVFPELPNLHTLSLRVNSLSGALPADLAACTALRNLFLQQNHFAGEVPAFLSGMTGLVRLNLASNNFSGPFPARFGNLTRLRTLFLENNRLTGSIPGLEELGELAQFNVSYNMLNGSVPKKLQTFDKDSFLGNTLCGKPLGICPWDDGGGESGVNGSSNSSGVGGGGGSVIGGGKKKGKLSGGAIAGIVVGCVVALLLVLFALIILCRSGNKTRSVDNVSNVVGLKEEPQQHGEVGIEGGNVESGGGAGGGGDSVAAAAAAAAVAAVGGNGVGGGSGGDKKLVFYGNKVKVFDLEDLLRASAEVLGKGTFGTTYKAVLEEGPVVAVKRLRDVTVSEKEFKEKIDGVGVMDHENLVPLRAYYYSRDEKLLVHDYMPMGSLSAILHGEFSLTLILKPKAHITTMQHSHKLFPTILFLFSFFSSTLSDLSSERAALLALRSAVRGRTLLWNTTFRSPCVWPGVQCDAANATVVELHLPAVALSGELPDGVFPELPNLHTLSLRVNSLSGALPADLAACTALRNLFLQQNHFAGEVPAFLSGMTGLVRLNLASNNFSGPFPARFGNLTRLRTLFLENNRLTGSIPGLEELGELAQFNVSYNMLNGSVPKKLQTFDKDSFLGNTLCGKPLGICPWDDGGGESGVNGSSNSSGVGGGGGSVIGGGKKKGKLSGGAIAGIVVGCVVALLLVLFALIILCRSGNKTRSVDNVSNVVGLKEEPQQHGEVGIEGGNVESGGGAGGGGDSVAAAAAAAAVAAVGGNGVGGGSGGDKKLVFYGNKVKVFDLEDLLRASAEVLGKGTFGTTYKAVLEEGPVVAVKRLRDVTVSEKEFKEKIDGVGVMDHENLVPLRAYYYSRDEKLLVHDYMPMGSLSAILHGNKGAGRTPLNWEMRSDIALGAARGIEYLHSQGPSVSHGNIKSSNILLSKSYDAKVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRRVSQKADVYSFGVLLLELLTGKAPTHTLLNEEGVDLPRWVQSVVREEWSSEVFDIELLRYQNSEEEMVQLLQLAVDCVVPYPGNRPSMSQVRQRMEEFRRSSSTMKEGTQDQIHQPDLIDDLEDVSSR 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium437g00020 1167 ProSitePatterns Protein kinases ATP-binding region signature. 874 896 IPR017441 GO:0005524
Vium437g00020 1167 FunFam pollen receptor-like kinase 1 840 942 - -
Vium437g00020 1167 Gene3D Ribonuclease Inhibitor 27 137 IPR032675 -
Vium437g00020 1167 Gene3D Ribonuclease Inhibitor 512 622 IPR032675 -
Vium437g00020 1167 ProSitePatterns Protein kinases ATP-binding region signature. 389 411 IPR017441 GO:0005524
Vium437g00020 1167 FunFam pollen receptor-like kinase 1 355 457 - -
Vium437g00020 1167 Pfam Protein kinase domain 387 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium437g00020 1167 Pfam Protein kinase domain 872 1132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium437g00020 1167 CDD STKc_IRAK 874 1137 - -
Vium437g00020 1167 Gene3D Ribonuclease Inhibitor 623 712 IPR032675 -
Vium437g00020 1167 Gene3D Ribonuclease Inhibitor 138 227 IPR032675 -
Vium437g00020 1167 SUPERFAMILY L domain-like 527 693 - -
Vium437g00020 1167 ProSiteProfiles Leucine-rich repeat profile. 649 671 IPR001611 GO:0005515
Vium437g00020 1167 Gene3D Transferase(Phosphotransferase) domain 1 943 1161 - -
Vium437g00020 1167 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515
Vium437g00020 1167 SUPERFAMILY Protein kinase-like (PK-like) 872 1134 IPR011009 -
Vium437g00020 1167 FunFam Probable inactive receptor kinase At1g48480 943 1146 - -
Vium437g00020 1167 FunFam Probable inactive receptor kinase RLK902 510 667 - -
Vium437g00020 1167 PANTHER OS05G0588300 PROTEIN 496 1141 - -
Vium437g00020 1167 ProSiteProfiles Protein kinase domain profile. 383 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium437g00020 1167 SUPERFAMILY L domain-like 42 208 - -
Vium437g00020 1167 MobiDBLite consensus disorder prediction 1127 1167 - -
Vium437g00020 1167 FunFam Probable inactive receptor kinase RLK902 25 182 - -
Vium437g00020 1167 SUPERFAMILY Protein kinase-like (PK-like) 387 473 IPR011009 -
Vium437g00020 1167 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Vium437g00020 1167 Pfam Leucine rich repeat N-terminal domain 511 547 IPR013210 -
Vium437g00020 1167 ProSiteProfiles Protein kinase domain profile. 868 1138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium437g00020 1167 MobiDBLite consensus disorder prediction 1152 1167 - -
Vium437g00020 1167 Gene3D Phosphorylase Kinase; domain 1 847 942 - -
Vium437g00020 1167 Gene3D Phosphorylase Kinase; domain 1 362 457 - -
Vium437g00020 1167 SMART LRR_typ_2 575 599 IPR003591 -
Vium437g00020 1167 SMART LRR_typ_2 647 670 IPR003591 -
Vium437g00020 1167 SMART LRR_typ_2 162 185 IPR003591 -
Vium437g00020 1167 SMART LRR_typ_2 90 114 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium437g00020 Vium-Chr437 94639 101976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium437g00020 24 469 Receptor kinase-like Gene Family AT1G48480 56.071 4.98e-146 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium437g00020 Pkinase 4.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium437g00020 - - vum:124840126 1873.21