Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium437g00018 ATGGTCTTCAAGGGAAGGTTCTTCTCTTCCAAAAAATCCGATTCCTCTAGCCCCGATGCGTCATCCAACAGTCCTCGATCTTTCTCCTCCAATTCCCCTTCCAGATCCGACAAGAAGAAGGCTAAATCCGCCGCCCATCCAACTTTAGCAGCCGGAGGCGGCGGTGGTGGAGCTCTTGCTGCGTGTCGTCAGACGCAGGTGAAAGACGGGACCAAGAAGAAGGATGTGGTCAAGGGGAAGGAAAGTCAAACTCCGCCGCCGGAAGCTCGCAAGGATTCTCCGGTGAAGAAGTTGACGGCGGCGGAGGGACGGGAATCGTCGGTGTCGCCGATTCTGGCGTCGTCGCTGGGGCTGAACAGGATCAAGACGAGATCGGGACCGCTGCCGCAGGAGAGCTTCTTCGGGTTCAGGGGCGAGAAGGGAACGACGGCGCTAGGCGGCAGCAATCTCTCCCGTCCCGGTGTCGGCGTGCGCGGCGGCGATGGGAAGAAGAAGGAACCGGCCAGCCAGAACAGGGTCGGGTTTCGTGAGGGTTCCCATGGCGGTGCCAGTGCTACCGGAGGGTGGGGCGATAATGGGAGCAATTCTGACAGCGTGTCGACCTTGGGGAGTATGCCGCCAAGGGAGCAGAGTCCGGTGGTGTTGCCTCGGTCGCGGTTGCAGAACGGGGAATCGTCCTCGGAAGCCGCAGCAGGCAAGCAGGCATCATCATGGGCTCAGTCTGGAGGCTTAAGAAGTGCAGATGTTTGTACTCCAGAGACGGCATATGATTTTGAAAACCCAAAGGAGTCTGAATCTCCTCGCTTTCAAGCCATATTACGTGTCACTAGTGCACCTAGAAAGAGGTTTCCTTCGGATATCAAAAGTTTTTCCCATGAGTTGAATTCGAAAGGTGTCTGGCCTTTTCCATTTTTGAAGCCTCGGCGGTTGAATAACCTTGAGGAGATTTTGGTCGTTATTAGGGCAAAATTTGATAAAGCGAAGGAAGATGTGAACTCTGATTTAGCCATTTTTGCGGCAGATCTTGTAGGAATTCTTGAAAAAAATGCAGATACTCATCCTGAATGGCAAGAGACAATTGAGGACTTGCTAGTTTTGGCAAGGAGTTGTGCTATGACTTCATCTGGCGAGTTTTGGCTTCAGTGTGAAAGCATAGTTCAGGAGTTGGATGATAGGCGTCAAGAGCATCCTCCTGGGATGCTAAAGCAGCTTCACACCCGAATGCTTTTCATTCTCACAAGGTGTACCCGATTATTGCAATTCCACAAGGAAAGTGGTTTGGCTGAGGATGAACCTGTTTTCAATCTTCGTCAATCAAGAGTCTTGCATTCTGCTGGAAAATGTATTCCTCCTAGTGTGGGAAGGGATGCTAAAAGTTCAAGTGCTGCAAAAGCCTTAAAGCCTTCATCTAAAAAAGCTTTTAGTCAAGAACAGAGTATGATGGGTTGGAAGAAAGATGTTATGCAACCGGAAAATCTTTCACTTCCTGCTGATGATGATAATACAAAACATTTTGACTCTTCAGGCAGGGATCGAATGGCTTCTTGGAAGAAATTCCCATCTCCGTCTGGAAAAAGCCCTAAAGAAGCTGCTCAGTTGAAGGACCAAAATTATGGGAGGGTTGAATCTTCAAAGGCATCAAATAATAAGAGATTCCCTTCTGATGTGGACCTTTCTACTGCAAAGCCATCTGAGTTTCTTCCTATCAAAGATTCCTTGGATCATGCTTCCAAACACCAACATAAAGTTTCTTGGGGATACTGGGGAGATCAGCAGAATAATAGTGAGGAGAACTCAATAATTTGTCGTATATGTGAAGAGGAAGTTCCTACTTCACATGTTGAAGATCATTCGAGGATTTGTGCAGTTGCTGATAGATGTGATCAGAAGGGACTGAGTGTCAATGATCGTCTTGTCAGAATTGCTGAAACACTAGAAAAGATGATGGAGTCTTGTTCACAAAAGGATACCCAACAAATGGTGGGAAGTCCTGATGTTGCAAAAGTATCAAATTCTAGTATGACTGAAGAATCTGATGTTCCTTCTCCTAAACTTAGTGATTGGTCTCGCAGAGGCTCAGATGACATGCTAGACTGTTTCCCCGAAACTGATAATTCTGCTTTTATGGATGACCTGAAAGGATTACCACTTATATCATGCAAAACTCGTTTTGGTCCAAAGTCTGACCAAGGTATGACAACATCATCTGCAGGGAGCATGACTCCAAGGTCACCATTGATGACACCACGGACAAGTCAGATTGACTTGCTCTTGGCCGGGAAGGGTGCTTATTCTGAACATGATGATCTGCTGCAGATGAATGAACTTGCTGATATAGCTCGATGTGTGGCAAATGCACCTCTGGACGATGATCGCACAACTTCATATTTATTATCTTGTCTTGATGACTTGCGGGTTGTTGTAGAACGAAGGAAATTTGATGCACTTACTGTGGAGACCTTTGGAACACGTATTGAGAAGCTCATACGAGAGAAGTATCTGCAGCTCACTGAGATGGTGGATGTTGAAAAGATAGATACAGAGAGCACAGTTGATGATGATGTTCTTTTGGAAGATGACGTGGTTCGTAGTTTGAGAACAAGCCCAATCCATTCATCAAGGGATCGTACCTCTATTGATGACTTTGAAATTATAAAACCTATCAGTCGTGGGGCATTTGGGAGGGTTTTCTTGGCTAAAAAGAGAACAACCGGTGATCTTTTTGCAATAAAGGTTCTCAAGAAGGCAGATATGATCCGTAAAAATGCTGTGGAAAGTATATTAGCAGAACGTGATATCTTAATTACAGTACGCAATCCTTTTGTGGTGCTTGCGTTAGAGTATTTGCATTCCCTGCATGTGGTTCATCGAGATCTGAAGCCTGACAATTTATTGATAGCACATGATGGTCACATCAAGTTAACAGACTTTGGGCTTTCTAAAGTTGGTCTCATCAACAGCACAGATGATCTGTCTGGCCCAGCAGTGAATGGGACATCCCTACTTGAAGAGGATGAGGCTGCTGATGTATTTACATCTGAGGATCAATGGGAAAGGAGGAAAAAACGCTCTGCAGTGGGCACGCCTGATTACTTAGCCCCAGAGATACTTTTGGGAACTGGACATGCGTATACTGCCGATTGGTGGTCTGTTGGGGTCATTTTATTTGAGTTGCTTGTTGGTATTCCACCCTTTAATGCCGAGCATCCTCAGACTATATTTGATAATATTCTTAATCGTAAAATACCTTGGCCTTCAGTTCCTGCAGAGATGAGTCCTGAAGCACAGGATCTTATTGATCGATTATTGACAGAAGATCCTAATCAGAGACTGGGATCTAAAGGCGCATCAGAGGTAAAGCAACATGTTTTCTTCAAGGATATAAACTGGGACACACTTGCCAGGCAGAAAGCTGCATTTGTTCCTGCTTCTGAGAGCGCTCTGGATACCAGTTACTTCACTAGTCGCTACTCATGGAATACTTCTGATGGCCTTGTATATCCAGCCAGTGATGTTGAGGATTCTAGTGATGCTGATAGCTTAAGTGGCAGCAGTAGTTGCTTGAGCAATCGCCAAGATGAAGTGGGAGATGAATGTGGGGGTCTTGCTGAGTTTGATTCTGGCACATCTGTCAATTACTCTTTCAGTAATTTCTCCTTCAAGAACCTCTCCCAGCTTGCATCTATCAACTACGATCTCACTAAAGGATGGAAAGATGATCCTCCGACGAATTCTAGTGCATAG 3744 0.4589 MVFKGRFFSSKKSDSSSPDASSNSPRSFSSNSPSRSDKKKAKSAAHPTLAAGGGGGGALAACRQTQVKDGTKKKDVVKGKESQTPPPEARKDSPVKKLTAAEGRESSVSPILASSLGLNRIKTRSGPLPQESFFGFRGEKGTTALGGSNLSRPGVGVRGGDGKKKEPASQNRVGFREGSHGGASATGGWGDNGSNSDSVSTLGSMPPREQSPVVLPRSRLQNGESSSEAAAGKQASSWAQSGGLRSADVCTPETAYDFENPKESESPRFQAILRVTSAPRKRFPSDIKSFSHELNSKGVWPFPFLKPRRLNNLEEILVVIRAKFDKAKEDVNSDLAIFAADLVGILEKNADTHPEWQETIEDLLVLARSCAMTSSGEFWLQCESIVQELDDRRQEHPPGMLKQLHTRMLFILTRCTRLLQFHKESGLAEDEPVFNLRQSRVLHSAGKCIPPSVGRDAKSSSAAKALKPSSKKAFSQEQSMMGWKKDVMQPENLSLPADDDNTKHFDSSGRDRMASWKKFPSPSGKSPKEAAQLKDQNYGRVESSKASNNKRFPSDVDLSTAKPSEFLPIKDSLDHASKHQHKVSWGYWGDQQNNSEENSIICRICEEEVPTSHVEDHSRICAVADRCDQKGLSVNDRLVRIAETLEKMMESCSQKDTQQMVGSPDVAKVSNSSMTEESDVPSPKLSDWSRRGSDDMLDCFPETDNSAFMDDLKGLPLISCKTRFGPKSDQGMTTSSAGSMTPRSPLMTPRTSQIDLLLAGKGAYSEHDDLLQMNELADIARCVANAPLDDDRTTSYLLSCLDDLRVVVERRKFDALTVETFGTRIEKLIREKYLQLTEMVDVEKIDTESTVDDDVLLEDDVVRSLRTSPIHSSRDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILITVRNPFVVLALEYLHSLHVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVNGTSLLEEDEAADVFTSEDQWERRKKRSAVGTPDYLAPEILLGTGHAYTADWWSVGVILFELLVGIPPFNAEHPQTIFDNILNRKIPWPSVPAEMSPEAQDLIDRLLTEDPNQRLGSKGASEVKQHVFFKDINWDTLARQKAAFVPASESALDTSYFTSRYSWNTSDGLVYPASDVEDSSDADSLSGSSSCLSNRQDEVGDECGGLAEFDSGTSVNYSFSNFSFKNLSQLASINYDLTKGWKDDPPTNSSA 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium437g00018 1247 MobiDBLite consensus disorder prediction 1 113 - -
Vium437g00018 1247 Gene3D Phosphorylase Kinase; domain 1 823 945 - -
Vium437g00018 1247 MobiDBLite consensus disorder prediction 9 32 - -
Vium437g00018 1247 Pfam Protein kinase domain 942 1125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium437g00018 1247 MobiDBLite consensus disorder prediction 537 555 - -
Vium437g00018 1247 Coils Coil 310 330 - -
Vium437g00018 1247 MobiDBLite consensus disorder prediction 463 477 - -
Vium437g00018 1247 CDD STKc_MAST_like 888 1130 - -
Vium437g00018 1247 Gene3D Transferase(Phosphotransferase) domain 1 946 1143 - -
Vium437g00018 1247 ProSiteProfiles Protein kinase domain profile. 753 1125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium437g00018 1247 MobiDBLite consensus disorder prediction 188 207 - -
Vium437g00018 1247 MobiDBLite consensus disorder prediction 1175 1192 - -
Vium437g00018 1247 MobiDBLite consensus disorder prediction 1170 1193 - -
Vium437g00018 1247 MobiDBLite consensus disorder prediction 726 748 - -
Vium437g00018 1247 PANTHER SERINE/THREONINE-PROTEIN KINASE 942 1219 - -
Vium437g00018 1247 Gene3D Phosphorylase Kinase; domain 1 1144 1154 - -
Vium437g00018 1247 ProSitePatterns Serine/Threonine protein kinases active-site signature. 954 966 IPR008271 GO:0004672|GO:0006468
Vium437g00018 1247 MobiDBLite consensus disorder prediction 652 689 - -
Vium437g00018 1247 SUPERFAMILY Protein kinase-like (PK-like) 879 1164 IPR011009 -
Vium437g00018 1247 MobiDBLite consensus disorder prediction 67 99 - -
Vium437g00018 1247 MobiDBLite consensus disorder prediction 215 244 - -
Vium437g00018 1247 MobiDBLite consensus disorder prediction 132 246 - -
Vium437g00018 1247 MobiDBLite consensus disorder prediction 450 558 - -
Vium437g00018 1247 MobiDBLite consensus disorder prediction 652 682 - -
Vium437g00018 1247 FunFam Serine/threonine protein kinase 15 1016 1143 - -
Vium437g00018 1247 SMART serkin_6 882 1125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium437g00018 1247 ProSiteProfiles AGC-kinase C-terminal domain profile. 1126 1230 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium437g00018 1247 MobiDBLite consensus disorder prediction 497 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium437g00018 Vium-Chr437 61606 79545 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium437g00018 1 1241 AGC Kinase Gene Family AT3G17850 62.227 0.0 1496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Vium437g00018 Pkinase 5.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium437g00018 - - gmx:100776995 2121.28