Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium437g00017 ATGGTCTTCAAGGGAAGGTTCTTCTCTTCCAAAAAATCCGATTCCTCTAGCCCCGATGCGTCATCCAACAGTCCTCGATCTTTCTCCTCCAATTCCCCTTCCAGATCCGACAAGAAGAAGGCTAAATCCGCCGCCCATCCAACTTTAGCAGCCGGAGGCGGCGGTGGTGGAGCTCTTGCTGCGTGTCGTCAGACGCAGGTGAAAGACGGGACCAAGAAGAAGGATGTGGTCAAGGGGAAGGAAAGTCAAACTCCGCCGCCGGAAGCTCGCAAGGATTCTCCGGTGAAGAAGTTGACGGCGGCGGAGGGACGGGAATCGTCGGTGTCGCCGATTCTGGCGTCGTCGCTGGGGCTGAACAGGATCAAGACGAGATCGGGACCGCTGCCGCAGGAGAGCTTCTTCGGGTTCAGGGGCGAGAAGGGAACGACGGCGCTAGGCGGCAGCAATCTCTCCCGTCCCGGTGTCGGCGTGCGCGGCGGCGATGGGAAGAAGAAGGAACCGGCCAGCCAGAACAGGGTCGGGTTTCGTGAGGGTTCCCATGGCGGTGCCAGTGCTACCGGAGGGTGGGGCGATAATGGGAGCAATTCTGACAGCGTGTCGACCTTGGGGAGTATGCCGCCAAGGGAGCAGAGTCCGGTGGTGTTGCCTCGGTCGCGGTTGCAGAACGGGGAATCGTCCTCGGAAGCCGCAGCAGGCAAGCAGGCATCATCATGGGCTCAGTCTGGAGGCTTAAGAAGTGCAGATGTTTGTACTCCAGAGACGGCATATGATTTTGAAAACCCAAAGGAGTCTGAATCTCCTCGCTTTCAAGCCATATTACGTGTCACTAGTGCACCTAGAAAGAGGTTTCCTTCGGATATCAAAAGTTTTTCCCATGAGTTGAATTCGAAAGGTGTCTGGCCTTTTCCATTTTTGAAGCCTCGGCGGTTGAATAACCTTGAGGAGATTTTGGTCGTTATTAGGGCAAAATTTGATAAAGCGAAGGAAGATGTGAACTCTGATTTAGCCATTTTTGCGGCAGATCTTGTAGGAATTCTTGAAAAAAATGCAGATACTCATCCTGAATGGCAAGAGACAATTGAGGACTTGCTAGTTTTGGCAAGGAGTTGTGCTATGACTTCATCTGGCGAGTTTTGGCTTCAGTGTGAAAGCATAGTTCAGGAGTTGGATGATAGGCGTCAAGAGCATCCTCCTGGGATGCTAAAGCAGCTTCACACCCGAATGCTTTTCATTCTCACAAGGTGTACCCGATTATTGCAATTCCACAAGGAAAGTGGTTTGGCTGAGGATGAACCTGTTTTCAATCTTCGTCAATCAAGAGTCTTGCATTCTGCTGGAAAATGTATTCCTCCTAGTGTGGGAAGGGATGCTAAAAGTTCAAGTGCTGCAAAAGCCTTAAAGCCTTCATCTAAAAAAGCTTTTAGTCAAGAACAGAGTATGATGGGTTGGAAGAAAGATGTTATGCAACCGGAAAATCTTTCACTTCCTGCTGATGATGATAATACAAAACATTTTGACTCTTCAGGCAGGGATCGAATGGCTTCTTGGAAGAAATTCCCATCTCCGTCTGGAAAAAGCCCTAAAGAAGCTGCTCAGTTGAAGGACCAAAATTATGGGAGGGTTGAATCTTCAAAGGCATCAAATAATAAGAGATTCCCTTCTGATGTGGACCTTTCTACTGCAAAGCCATCTGAGTTTCTTCCTATCAAAGATTCCTTGGATCATGCTTCCAAACACCAACATAAAGTTTCTTGGGGATACTGGGGAGATCAGCAGAATAATAGTGAGGAGAACTCAATAATTTGTCGTATATGTGAAGAGGAAGTTCCTACTTCACATGTTGAAGATCATTCGAGGATTTGTGCAGTTGCTGATAGATGTGATCAGAAGGGACTGAGTGTCAATGATCGTCTTGTCAGAATTGCTGAAACACTAGAAAAGATGATGGAGTCTTGTTCACAAAAGGATACCCAACAAATGGTGGGAAGTCCTGATGTTGCAAAAGTATCAAATTCTAGTATGACTGAAGAATCTGATGTTCCTTCTCCTAAACTTAGTGATTGGTCTCGCAGAGGCTCAGATGACATGCTAGACTGTTTCCCCGAAACTGATAATTCTGCTTTTATGGATGACCTGAAAGGATTACCACTTATATCATGCAAAACTCGTTTTGGTCCAAAGTCTGACCAAGGTATGACAACATCATCTGCAGGGAGCATGACTCCAAGGTCACCATTGATGACACCACGGACAAGTCAGATTGACTTGCTCTTGGCCGGGAAGGGTGCTTATTCTGAACATGATGATCTGCTGCAGATGAATGAACTTGCTGATATAGCTCGATGTGTGGCAAATGCACCTCTGGACGATGATCGCACAACTTCATATTTATTATCTTGTCTTGATGACTTGCGGGTTGTTGTAGAACGAAGGAAATTTGATGCACTTACTGTGGAGACCTTTGGAACACGTATTGAGAAGCTCATACGAGAGAAGTATCTGCAGCTCACTGAGATGGTGGATGTTGAAAAGATAGATACAGAGAGCACAGTTGATGATGATGTTCTTTTGGAAGATGACGTGGTTCGTAGTTTGAGAACAAGCCCAATCCATTCATCAAGGGATCGTACCTCTATTGATGACTTTGAAATTATAAAACCTATCAGTCGTGGGGCATTTGGGAGGGTTTTCTTGGCTAAAAAGAGAACAACCGGTGATCTTTTTGCAATAAAGGTTCTCAAGAAGGCAGATATGATCCGTAAAAATGCTGTGGAAAGTATATTAGCAGAACGTGATATCTTAATTACAGTACGCAATCCTTTTGTGGTTCGATTCTTCTATTCTTTTACATGTCGTGAAAACTTATATCTTGTTATGGAGTATCTGAATGGAGGTGACCTGTATTCATTATTAAGAAATTTAGGTTGCCTAGATGAGGAAGTTGCTCGAGTATATATTGCTGAAGTGGTGCTTGCGTTAGAGTATTTGCATTCCCTGCATGTGGTTCATCGAGATCTGAAGCCTGACAATTTATTGATAGCACATGATGGTCACATCAAGTTAACAGACTTTGGGCTTTCTAAAGTTGGTCTCATCAACAGCACAGATGATCTGTCTGGCCCAGCAGTGAATGGGACATCCCTACTTGAAGAGGATGAGGCTGCTGATGTATTTACATCTGAGGATCAATGGGAAAGGAGGAAAAAACGCTCTGCAGTGGGCACGCCTGATTACTTAGCCCCAGAGATACTTTTGGGAACTGGACATGCGTATACTGCCGATTGGTGGTCTGTTGGGGTCATTTTATTTGAGTTGCTTGTTGGTATTCCACCCTTTAATGCCGAGCATCCTCAGACTATATTTGATAATATTCTTAATCGTAAAATACCTTGGCCTTCAGTTCCTGCAGAGATGAGTCCTGAAGCACAGGATCTTATTGATCGATTATTGACAGAAGATCCTAATCAGAGACTGGGATCTAAAGGCGCATCAGAGGTAAAGCAACATGTTTTCTTCAAGGATATAAACTGGGACACACTTGCCAGGCAGAAAGCTGCATTTGTTCCTGCTTCTGAGAGCGCTCTGGATACCAGTTACTTCACTAGTCGCTACTCATGGAATACTTCTGATGGCCTTGTATATCCAGCCAGTGATGTTGAGGATTCTAGTGATGCTGATAGCTTAAGTGGCAGCAGTAGTTGCTTGAGCAATCGCCAAGATGAAGTGGGAGATGAATGTGGGGGTCTTGCTGAGTTTGATTCTGGCACATCTGTCAATTACTCTTTCAGTAATTTCTCCTTCAAGAACCTCTCCCAGCTTGCATCTATCAACTACGATCTCACTAAAGGATGGAAAGATGATCCTCCGACGAATTCTAGTGCATAG 3885 0.4548 MVFKGRFFSSKKSDSSSPDASSNSPRSFSSNSPSRSDKKKAKSAAHPTLAAGGGGGGALAACRQTQVKDGTKKKDVVKGKESQTPPPEARKDSPVKKLTAAEGRESSVSPILASSLGLNRIKTRSGPLPQESFFGFRGEKGTTALGGSNLSRPGVGVRGGDGKKKEPASQNRVGFREGSHGGASATGGWGDNGSNSDSVSTLGSMPPREQSPVVLPRSRLQNGESSSEAAAGKQASSWAQSGGLRSADVCTPETAYDFENPKESESPRFQAILRVTSAPRKRFPSDIKSFSHELNSKGVWPFPFLKPRRLNNLEEILVVIRAKFDKAKEDVNSDLAIFAADLVGILEKNADTHPEWQETIEDLLVLARSCAMTSSGEFWLQCESIVQELDDRRQEHPPGMLKQLHTRMLFILTRCTRLLQFHKESGLAEDEPVFNLRQSRVLHSAGKCIPPSVGRDAKSSSAAKALKPSSKKAFSQEQSMMGWKKDVMQPENLSLPADDDNTKHFDSSGRDRMASWKKFPSPSGKSPKEAAQLKDQNYGRVESSKASNNKRFPSDVDLSTAKPSEFLPIKDSLDHASKHQHKVSWGYWGDQQNNSEENSIICRICEEEVPTSHVEDHSRICAVADRCDQKGLSVNDRLVRIAETLEKMMESCSQKDTQQMVGSPDVAKVSNSSMTEESDVPSPKLSDWSRRGSDDMLDCFPETDNSAFMDDLKGLPLISCKTRFGPKSDQGMTTSSAGSMTPRSPLMTPRTSQIDLLLAGKGAYSEHDDLLQMNELADIARCVANAPLDDDRTTSYLLSCLDDLRVVVERRKFDALTVETFGTRIEKLIREKYLQLTEMVDVEKIDTESTVDDDVLLEDDVVRSLRTSPIHSSRDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILITVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEEVARVYIAEVVLALEYLHSLHVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVNGTSLLEEDEAADVFTSEDQWERRKKRSAVGTPDYLAPEILLGTGHAYTADWWSVGVILFELLVGIPPFNAEHPQTIFDNILNRKIPWPSVPAEMSPEAQDLIDRLLTEDPNQRLGSKGASEVKQHVFFKDINWDTLARQKAAFVPASESALDTSYFTSRYSWNTSDGLVYPASDVEDSSDADSLSGSSSCLSNRQDEVGDECGGLAEFDSGTSVNYSFSNFSFKNLSQLASINYDLTKGWKDDPPTNSSA 1294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium437g00017 1294 SMART serkin_6 882 1172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium437g00017 1294 MobiDBLite consensus disorder prediction 1 113 - -
Vium437g00017 1294 CDD STKc_MAST_like 888 1177 - -
Vium437g00017 1294 ProSiteProfiles AGC-kinase C-terminal domain profile. 1173 1277 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium437g00017 1294 SUPERFAMILY Protein kinase-like (PK-like) 879 1211 IPR011009 -
Vium437g00017 1294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1001 1013 IPR008271 GO:0004672|GO:0006468
Vium437g00017 1294 MobiDBLite consensus disorder prediction 9 32 - -
Vium437g00017 1294 MobiDBLite consensus disorder prediction 537 555 - -
Vium437g00017 1294 Coils Coil 310 330 - -
Vium437g00017 1294 FunFam probable serine/threonine protein kinase IREH1 880 969 - -
Vium437g00017 1294 MobiDBLite consensus disorder prediction 463 477 - -
Vium437g00017 1294 MobiDBLite consensus disorder prediction 188 207 - -
Vium437g00017 1294 ProSiteProfiles Protein kinase domain profile. 882 1172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium437g00017 1294 Gene3D Phosphorylase Kinase; domain 1 880 1201 - -
Vium437g00017 1294 MobiDBLite consensus disorder prediction 726 748 - -
Vium437g00017 1294 Pfam Protein kinase domain 882 1172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium437g00017 1294 PANTHER SERINE/THREONINE-PROTEIN KINASE 622 1266 - -
Vium437g00017 1294 MobiDBLite consensus disorder prediction 652 689 - -
Vium437g00017 1294 MobiDBLite consensus disorder prediction 1222 1239 - -
Vium437g00017 1294 Gene3D Transferase(Phosphotransferase) domain 1 966 1190 - -
Vium437g00017 1294 MobiDBLite consensus disorder prediction 67 99 - -
Vium437g00017 1294 MobiDBLite consensus disorder prediction 215 244 - -
Vium437g00017 1294 MobiDBLite consensus disorder prediction 132 246 - -
Vium437g00017 1294 MobiDBLite consensus disorder prediction 1217 1240 - -
Vium437g00017 1294 MobiDBLite consensus disorder prediction 450 558 - -
Vium437g00017 1294 MobiDBLite consensus disorder prediction 652 682 - -
Vium437g00017 1294 MobiDBLite consensus disorder prediction 497 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium437g00017 Vium-Chr437 61606 79545 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium437g00017 1 1288 AGC Kinase Gene Family AT3G17850 65.388 0.0 1613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Vium437g00017 Pkinase 6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium437g00017 - - gmx:100776995 2238.38