Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium437g00015 ATGGTCTTCAAGGGAAGGTTCTTCTCTTCCAAAAAATCCGATTCCTCTAGCCCCGATGCGTCATCCAACAGTCCTCGATCTTTCTCCTCCAATTCCCCTTCCAGATCCGACAAGAAGAAGGCTAAATCCGCCGCCCATCCAACTTTAGCAGCCGGAGGCGGCGGTGGTGGAGCTCTTGCTGCGTGTCGTCAGACGCAGGTGAAAGACGGGACCAAGAAGAAGGATGTGGTCAAGGGGAAGGAAAGTCAAACTCCGCCGCCGGAAGCTCGCAAGGATTCTCCGGTGAAGAAGTTGACGGCGGCGGAGGGACGGGAATCGTCGGTGTCGCCGATTCTGGCGTCGTCGCTGGGGCTGAACAGGATCAAGACGAGATCGGGACCGCTGCCGCAGGAGAGCTTCTTCGGGTTCAGGGGCGAGAAGGGAACGACGGCGCTAGGCGGCAGCAATCTCTCCCGTCCCGGTGTCGGCGTGCGCGGCGGCGATGGGAAGAAGAAGGAACCGGCCAGCCAGAACAGGGTCGGGTTTCGTGAGGGTTCCCATGGCGGTGCCAGTGCTACCGGAGGGTGGGGCGATAATGGGAGCAATTCTGACAGCGTGTCGACCTTGGGGAGTATGCCGCCAAGGGAGCAGAGTCCGGTGGTGTTGCCTCGGTCGCGGTTGCAGAACGGGGAATCGTCCTCGGAAGCCGCAGCAGGCAAGCAGGCATCATCATGGGCTCAGTCTGGAGGCTTAAGAAGTGCAGATGTTTGTACTCCAGAGACGGCATATGATTTTGAAAACCCAAAGGAGTCTGAATCTCCTCGCTTTCAAGCCATATTACGTGTCACTAGTGCACCTAGAAAGAGGTTTCCTTCGGATATCAAAAGTTTTTCCCATGAGTTGAATTCGAAAGGTGTCTGGCCTTTTCCATTTTTGAAGCCTCGGCGGTTGAATAACCTTGAGGAGATTTTGGTCGTTATTAGGGCAAAATTTGATAAAGCGAAGGAAGATGTGAACTCTGATTTAGCCATTTTTGCGGCAGATCTTGTAGGAATTCTTGAAAAAAATGCAGATACTCATCCTGAATGGCAAGAGACAATTGAGGACTTGCTAGTTTTGGCAAGGAGTTGTGCTATGACTTCATCTGGCGAGTTTTGGCTTCAGTGTGAAAGCATAGTTCAGGAGTTGGATGATAGGCGTCAAGAGCATCCTCCTGGGATGCTAAAGCAGCTTCACACCCGAATGCTTTTCATTCTCACAAGGTGTACCCGATTATTGCAATTCCACAAGGAAAGTGGTTTGGCTGAGGATGAACCTGTTTTCAATCTTCGTCAATCAAGAGTCTTGCATTCTGCTGGAAAATGTATTCCTCCTAGTGTGGGAAGGGATGCTAAAAGTTCAAGTGCTGCAAAAGCCTTAAAGCCTTCATCTAAAAAAGCTTTTAGTCAAGAACAGAGTATGATGGGTTGGAAGAAAGATGTTATGCAACCGGAAAATCTTTCACTTCCTGCTGATGATGATAATACAAAACATTTTGACTCTTCAGGCAGGGATCGAATGGCTTCTTGGAAGAAATTCCCATCTCCGTCTGGAAAAAGCCCTAAAGAAGCTGCTCAGTTGAAGGACCAAAATTATGGGAGGGTTGAATCTTCAAAGGCATCAAATAATAAGAGATTCCCTTCTGATGTGGACCTTTCTACTGCAAAGCCATCTGAGTTTCTTCCTATCAAAGATTCCTTGGATCATGCTTCCAAACACCAACATAAAGTTTCTTGGGGATACTGGGGAGATCAGCAGAATAATAGTGAGGAGAACTCAATAATTTGTCGTATATGTGAAGAGGAAGTTCCTACTTCACATGTTGAAGATCATTCGAGGATTTGTGCAGTTGCTGATAGATGTGATCAGAAGGGACTGAGTGTCAATGATCGTCTTGTCAGAATTGCTGAAACACTAGAAAAGATGATGGAGTCTTGTTCACAAAAGGATACCCAACAAATGGTGGGAAGTCCTGATGTTGCAAAAGTATCAAATTCTAGTATGACTGAAGAATCTGATGTTCCTTCTCCTAAACTTAGTGATTGGTCTCGCAGAGGCTCAGATGACATGCTAGACTGTTTCCCCGAAACTGATAATTCTGCTTTTATGGATGACCTGAAAGGATTACCACTTATATCATGCAAAACTCGTTTTGGTCCAAAGTCTGACCAAGGTATGACAACATCATCTGCAGGGAGCATGACTCCAAGGTCACCATTGATGACACCACGGACAAGTCAGATTGACTTGCTCTTGGCCGGGAAGGGTGCTTATTCTGAACATGATGATCTGCTGCAGATGAATGAACTTGCTGATATAGCTCGATGTGTGGCAAATGCACCTCTGGACGATGATCGCACAACTTCATATTTATTATCTTGTCTTGATGACTTGCGGGTTGTTGTAGAACGAAGGAAATTTGATGCACTTACTGTGGAGACCTTTGGAACACGTATTGAGAAGCTCATACGAGAGAAGTATCTGCAGCTCACTGAGATGGTGGATGTTGAAAAGATAGATACAGAGAGCACAGTTGATGATGATGTTCTTTTGGAAGATGACGTGGTTCGTAGTTTGAGAACAAGCCCAATCCATTCATCAAGGGATCGTACCTCTATTGATGACTTTGAAATTATAAAACCTATCAGTCGTGGGGCATTTGGGAGGGTTTTCTTGGCTAAAAAGAGAACAACCGGTGATCTTTTTGCAATAAAGGTTCTCAAGAAGGCAGATATGATCCGTAAAAATGCTGTGGAAAGTATATTAGCAGAACGTGATATCTTAATTACAGTACGCAATCCTTTTGTGGTTCGATTCTTCTATTCTTTTACATGTCGTGAAAACTTATATCTTGTTATGGAGTATCTGAATGGAGGTGACCTGTATTCATTATTAAGAAATTTAGGTTGCCTAGATGAGGAAGTTGCTCGAGTATATATTGCTGAAGTGGTGCTTGCGTTAGAGTATTTGCATTCCCTGCATGTGGTTCATCGAGATCTGAAGCCTGACAATTTATTGATAGCACATGATGGTCACATCAAGTTAACAGACTTTGGGCTTTCTAAAGTTGGTCTCATCAACAGCACAGATGATCTGTCTGGCCCAGCAGTGAATGGGACATCCCTACTTGAAGAGGATGAGGCTGCTGATGTATTTACATCTGAGGATCAATGGGAAAGGAGGAAAAAACGCTCTGCAGTGGGCACGCCTGATTACTTAGCCCCAGAGATACTTTTGGGAACTGGACATGGTTTGTATTGTCCCAATTTTATGTTTAAGCGTATACTGCCGATTGGTGGTCTGTTGGGGTCATTTTATTTGAGTTGCTTGTTGGTATTCCACCCTTTAATGCCGAGCATCCTCAGACTATATTTGATAATATTCTTAATCGTAAAATACCTTGGCCTTCAGTTCCTGCAGAGATGA 3444 0.455 MVFKGRFFSSKKSDSSSPDASSNSPRSFSSNSPSRSDKKKAKSAAHPTLAAGGGGGGALAACRQTQVKDGTKKKDVVKGKESQTPPPEARKDSPVKKLTAAEGRESSVSPILASSLGLNRIKTRSGPLPQESFFGFRGEKGTTALGGSNLSRPGVGVRGGDGKKKEPASQNRVGFREGSHGGASATGGWGDNGSNSDSVSTLGSMPPREQSPVVLPRSRLQNGESSSEAAAGKQASSWAQSGGLRSADVCTPETAYDFENPKESESPRFQAILRVTSAPRKRFPSDIKSFSHELNSKGVWPFPFLKPRRLNNLEEILVVIRAKFDKAKEDVNSDLAIFAADLVGILEKNADTHPEWQETIEDLLVLARSCAMTSSGEFWLQCESIVQELDDRRQEHPPGMLKQLHTRMLFILTRCTRLLQFHKESGLAEDEPVFNLRQSRVLHSAGKCIPPSVGRDAKSSSAAKALKPSSKKAFSQEQSMMGWKKDVMQPENLSLPADDDNTKHFDSSGRDRMASWKKFPSPSGKSPKEAAQLKDQNYGRVESSKASNNKRFPSDVDLSTAKPSEFLPIKDSLDHASKHQHKVSWGYWGDQQNNSEENSIICRICEEEVPTSHVEDHSRICAVADRCDQKGLSVNDRLVRIAETLEKMMESCSQKDTQQMVGSPDVAKVSNSSMTEESDVPSPKLSDWSRRGSDDMLDCFPETDNSAFMDDLKGLPLISCKTRFGPKSDQGMTTSSAGSMTPRSPLMTPRTSQIDLLLAGKGAYSEHDDLLQMNELADIARCVANAPLDDDRTTSYLLSCLDDLRVVVERRKFDALTVETFGTRIEKLIREKYLQLTEMVDVEKIDTESTVDDDVLLEDDVVRSLRTSPIHSSRDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILITVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEEVARVYIAEVVLALEYLHSLHVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVNGTSLLEEDEAADVFTSEDQWERRKKRSAVGTPDYLAPEILLGTGHGLYCPNFMFKRILPIGGLLGSFYLSCLLVFHPLMPSILRLYLIIFLIVKYLGLQFLQR 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium437g00015 1147 MobiDBLite consensus disorder prediction 1 113 - -
Vium437g00015 1147 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1001 1013 IPR008271 GO:0004672|GO:0006468
Vium437g00015 1147 MobiDBLite consensus disorder prediction 9 32 - -
Vium437g00015 1147 MobiDBLite consensus disorder prediction 537 555 - -
Vium437g00015 1147 FunFam AGC protein kinase 962 1033 - -
Vium437g00015 1147 Coils Coil 310 330 - -
Vium437g00015 1147 SUPERFAMILY Protein kinase-like (PK-like) 867 1091 IPR011009 -
Vium437g00015 1147 FunFam probable serine/threonine protein kinase IREH1 880 969 - -
Vium437g00015 1147 MobiDBLite consensus disorder prediction 463 477 - -
Vium437g00015 1147 CDD STKc_MAST_like 888 1090 - -
Vium437g00015 1147 MobiDBLite consensus disorder prediction 188 207 - -
Vium437g00015 1147 Gene3D Phosphorylase Kinase; domain 1 811 979 - -
Vium437g00015 1147 MobiDBLite consensus disorder prediction 726 748 - -
Vium437g00015 1147 MobiDBLite consensus disorder prediction 652 689 - -
Vium437g00015 1147 Pfam Protein kinase domain 882 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium437g00015 1147 PANTHER SERINE/THREONINE-PROTEIN KINASE 586 1090 - -
Vium437g00015 1147 MobiDBLite consensus disorder prediction 67 99 - -
Vium437g00015 1147 SMART serkin_6 882 1135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium437g00015 1147 MobiDBLite consensus disorder prediction 215 244 - -
Vium437g00015 1147 ProSiteProfiles Protein kinase domain profile. 882 1147 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium437g00015 1147 MobiDBLite consensus disorder prediction 132 246 - -
Vium437g00015 1147 MobiDBLite consensus disorder prediction 450 558 - -
Vium437g00015 1147 MobiDBLite consensus disorder prediction 652 682 - -
Vium437g00015 1147 Gene3D Transferase(Phosphotransferase) domain 1 980 1094 - -
Vium437g00015 1147 MobiDBLite consensus disorder prediction 497 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium437g00015 Vium-Chr437 61605 78378 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium437g00015 1 1090 AGC Kinase Gene Family AT3G17850 63.172 0.0 1306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Vium437g00015 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium437g00015 - - gmx:100776995 1864.35