Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium437g00013 ATGCAGTGGTCATTCCCAAACAAGGTTTCAGTCCTTCCTCAGTTCCTTTCCTTCAAGACCAATCAGGAAGACAGGCCTAGAAAGACTATTATTGATTCACTAGCTTCATCTGGATATATGAACATGCCATCTAAAGAGGCTTTTGAGTCTAACCAGAAACCATTTTTGGGTGTGGCTCAGAGAAATTTGTACATAGGCAAGCATAGTGCAGGAAACAAACAGGGAAGGACAGTTTATCCAATGCAATGTATTGATGCACAATCTGCATGCCTTCAGGAGGCAAGAATATTTTCAGTTTCCAACCAATCAAATCAAGTGAGTCCTGCTCTTCAGTCTAATCTTGCTACAACCGGATTGAACATGGTCAATTCAGTCATAAAACCACAACCTCTTGGTTCCAAATCCTCTGGCACACCTCTATCTGTTCTTCCATCAATAGGTTCCATTGTTGGATCCACTGACTTAAGTTTTTCCTTCAGGAATAGTTCCAAATCCTCTGGCATGGCTACACAGCTCACCATTTTCTATTCTGGTTCCGTATGTGTTTATAACGACATAACTCCTGAGAAGGCCAAGGATATAATGTTAATGGCTGGAAATGGGTCTGCCCCAACTCAGAAAATGGCAATTTCCACAGCTAAATTGCAGACAGCAGTTTCTATTCCCTCCAAAGATGATGGTTTCATTATGAGCCAATCATATTCTCCCTCACCCCTCCCAACCTCTCTCTCATTGACCTCTCATGTCAATTCTCAGCCAGGAGCAGGAACTTCTAGCTACAATAAGCTTGCAATGATAAGACCAATAGTAGGATCTTCAATTGCCCCTACTAACCATTTGGAGTCCCCTATCGTTGTTGGTTCTGTAGGATCTGCATCTAAGGAAAGTGCTCAACCAGTATACTTGCCTCAGGCACGCAAAGCATCCTTGACTCGGTTTTTGGAGAAGAGAAAGGAAAGGATGACGAGCACATCACCATACTTTTATATGAGCAAGAAATCATCTGAAAGCTGCTCATCTGGATCAGACAGTGCTAGTTTCTCCCTTAACTTCTCTGGATCCTGTTCTGTACCAGCCACCAACTAG 1086 0.4282 MQWSFPNKVSVLPQFLSFKTNQEDRPRKTIIDSLASSGYMNMPSKEAFESNQKPFLGVAQRNLYIGKHSAGNKQGRTVYPMQCIDAQSACLQEARIFSVSNQSNQVSPALQSNLATTGLNMVNSVIKPQPLGSKSSGTPLSVLPSIGSIVGSTDLSFSFRNSSKSSGMATQLTIFYSGSVCVYNDITPEKAKDIMLMAGNGSAPTQKMAISTAKLQTAVSIPSKDDGFIMSQSYSPSPLPTSLSLTSHVNSQPGAGTSSYNKLAMIRPIVGSSIAPTNHLESPIVVGSVGSASKESAQPVYLPQARKASLTRFLEKRKERMTSTSPYFYMSKKSSESCSSGSDSASFSLNFSGSCSVPATN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium437g00013 361 SMART tify_2 165 200 IPR010399 -
Vium437g00013 361 Pfam Jas motif 303 327 IPR018467 -
Vium437g00013 361 ProSiteProfiles Tify domain profile. 165 200 IPR010399 -
Vium437g00013 361 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 101 340 IPR040390 -
Vium437g00013 361 Pfam tify domain 169 199 IPR010399 -
Vium437g00013 361 MobiDBLite consensus disorder prediction 332 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium437g00013 Vium-Chr437 37988 42142 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium437g00013 1 338 Tify Gene Family AT3G17860 38.873 1.19e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vium437g00013 tify 2.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium437g00013 K13464 - gmx:100807288 491.115