Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium437g00012 ATGGAGAGAGAATTTTTTGACTTGAGTTCCAAAAACATGAAAGATGATGCTGCTAACAAACCAAAAGACCCAGCGAGGAGTTCAGGAATGCAGTGGTCATTCCCAAACAAGGTTTCAGTCCTTCCTCAGTTCCTTTCCTTCAAGACCAATCAGGAAGACAGGCCTAGAAAGACTATTATTGATTCACTAGCTTCATCTGGATATATGAACATGCCATCTAAAGAGGCTTTTGAGTCTAACCAGAAACCATTTTTGGGTGTGGCTCAGAGAAATTTGTACATAGGCAAGCATAGTGCAGGAAACAAACAGGGAAGGACAGTTTATCCAATGCAATGTATTGATGCACAATCTGCATGCCTTCAGGAGGCAAGAATATTTTCAGTTTCCAACCAATCAAATCAAGTGAGTCCTGCTCTTCAGTCTAATCTTGCTACAACCGGATTGAACATGGTCAATTCAGTCATAAAACCACAACCTCTTGGTTCCAAATCCTCTGGCACACCTCTATCTGTTCTTCCATCAATAGGTTCCATTGTTGGATCCACTGACTTAAGTTTTTCCTTCAGGAATAGTTCCAAATCCTCTGGCATGGCTACACAGCTCACCATTTTCTATTCTGGTTCCGTATGTGTTTATAACGACATAACTCCTGAGAAGGCCAAGGATATAATGTTAATGGCTGGAAATGGGTCTGCCCCAACTCAGAAAATGGCAATTTCCACAGCTAAATTGCAGACAGCAGTTTCTATTCCCTCCAAAGATGATGGTTTCATTATGAGCCAATCATATTCTCCCTCACCCCTCCCAACCTCTCTCTCATTGACCTCTCATGTCAATTCTCAGCCAGGAGCAGGAACTTCTAGCTACAATAAGCTTGCAATGATAAGACCAATAGTAGGATCTTCAATTGCCCCTACTAACCATTTGGAGTCCCCTATCGTTGTTGGTTCTGTAGGATCTGCATCTAAGGAAAGTGCTCAACCAGTATACTTGCCTCAGGCACGCAAAGCATCCTTGACTCGGTTTTTGGAGAAGAGAAAGGAAAGGATGACGAGCACATCACCATACTTTTATATGAGCAAGAAATCATCTGAAAGCTGCTCATCTGGATCAGACAGTGCTAGTTTCTCCCTTAACTTCTCTGGATCCTGTTCTGTACCAGCCACCAACTAG 1173 0.4263 MEREFFDLSSKNMKDDAANKPKDPARSSGMQWSFPNKVSVLPQFLSFKTNQEDRPRKTIIDSLASSGYMNMPSKEAFESNQKPFLGVAQRNLYIGKHSAGNKQGRTVYPMQCIDAQSACLQEARIFSVSNQSNQVSPALQSNLATTGLNMVNSVIKPQPLGSKSSGTPLSVLPSIGSIVGSTDLSFSFRNSSKSSGMATQLTIFYSGSVCVYNDITPEKAKDIMLMAGNGSAPTQKMAISTAKLQTAVSIPSKDDGFIMSQSYSPSPLPTSLSLTSHVNSQPGAGTSSYNKLAMIRPIVGSSIAPTNHLESPIVVGSVGSASKESAQPVYLPQARKASLTRFLEKRKERMTSTSPYFYMSKKSSESCSSGSDSASFSLNFSGSCSVPATN 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium437g00012 390 ProSiteProfiles Tify domain profile. 194 229 IPR010399 -
Vium437g00012 390 MobiDBLite consensus disorder prediction 1 31 - -
Vium437g00012 390 Pfam Jas motif 332 356 IPR018467 -
Vium437g00012 390 SMART tify_2 194 229 IPR010399 -
Vium437g00012 390 MobiDBLite consensus disorder prediction 1 22 - -
Vium437g00012 390 Pfam tify domain 198 228 IPR010399 -
Vium437g00012 390 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 130 369 IPR040390 -
Vium437g00012 390 MobiDBLite consensus disorder prediction 360 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium437g00012 Vium-Chr437 37988 44514 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium437g00012 30 367 Tify Gene Family AT3G17860 38.936 2.90e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vium437g00012 tify 2.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium437g00012 K13464 - gmx:100807288 529.635