Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium437g00011 ATGGAGAGAGAATTTTTTGACTTGAGTTCCAAAAACATGAAAGATGATGCTGCTAACAAACCAAAAGACCCAGCGAGGAGTTCAGGAATGCAGTGGTCATTCCCAAACAAGGTTTCAGTCCTTCCTCAGTTCCTTTCCTTCAAGACCAATCAGGAAGACAGGCCTAGAAAGACTATTATTGATTCACTAGCTTCATCTGGATATATGAACATGCCATCTAAAGAGGCTTTTGAGTCTAACCAGAAACCATTTTTGGGTGTGGCTCAGAGAAATTTGTACATAGGCAAGCATAGTGCAGGAAACAAACAGGGAAGGACAGTTTATCCAATGCAATGTATTGATGCACAATCTGCATGCCTTCAGGAGGCAAGAATATTTTCAGTTTCCAACCAATCAAATCAAGTGAGTCCTGCTCTTCAGTCTAATCTTGCTACAACCGGATTGAACATGGTCAATTCAGTCATAAAACCACAACCTCTTGGTTCCAAATCCTCTGGCACACCTCTATCTGTTCTTCCATCAATAGGTTCCATTGTTGGATCCACTGACTTAAGGAATAGTTCCAAATCCTCTGGCATGGCTACACAGCTCACCATTTTCTATTCTGGTTCCGTATGTGTTTATAACGACATAACTCCTGAGAAGGCCAAGGATATAATGTTAATGGCTGGAAATGGGTCTGCCCCAACTCAGAAAATGGCAATTTCCACAGCTAAATTGCAGACAGCAGTTTCTATTCCCTCCAAAGATGATGGTTTCATTATGAGCCAATCATATTCTCCCTCACCCCTCCCAACCTCTCTCTCATTGACCTCTCATGTCAATTCTCAGCCAGGAGCAGGAACTTCTAGCTACAATAAGCTTGCAATGATAAGACCAATAGTAGGATCTTCAATTGCCCCTACTAACCATTTGGAGTCCCCTATCGTTGTTGGTTCTGTAGGATCTGCATCTAAGGAAAGTGCTCAACCAGTATACTTGCCTCAGGCACGCAAAGCATCCTTGACTCGGTTTTTGGAGAAGAGAAAGGAAAGGATGACGAGCACATCACCATACTTTTATATGAGCAAGAAATCATCTGAAAGCTGCTCATCTGGATCAGACAGTGCTAGTTTCTCCCTTAACTTCTCTGGATCCTGTTCTGTACCAGCCACCAACTAG 1161 0.4272 MEREFFDLSSKNMKDDAANKPKDPARSSGMQWSFPNKVSVLPQFLSFKTNQEDRPRKTIIDSLASSGYMNMPSKEAFESNQKPFLGVAQRNLYIGKHSAGNKQGRTVYPMQCIDAQSACLQEARIFSVSNQSNQVSPALQSNLATTGLNMVNSVIKPQPLGSKSSGTPLSVLPSIGSIVGSTDLRNSSKSSGMATQLTIFYSGSVCVYNDITPEKAKDIMLMAGNGSAPTQKMAISTAKLQTAVSIPSKDDGFIMSQSYSPSPLPTSLSLTSHVNSQPGAGTSSYNKLAMIRPIVGSSIAPTNHLESPIVVGSVGSASKESAQPVYLPQARKASLTRFLEKRKERMTSTSPYFYMSKKSSESCSSGSDSASFSLNFSGSCSVPATN 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium437g00011 386 SMART tify_2 190 225 IPR010399 -
Vium437g00011 386 Pfam Jas motif 328 352 IPR018467 -
Vium437g00011 386 MobiDBLite consensus disorder prediction 1 31 - -
Vium437g00011 386 Pfam tify domain 194 224 IPR010399 -
Vium437g00011 386 MobiDBLite consensus disorder prediction 1 22 - -
Vium437g00011 386 ProSiteProfiles Tify domain profile. 190 225 IPR010399 -
Vium437g00011 386 MobiDBLite consensus disorder prediction 356 386 - -
Vium437g00011 386 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 130 365 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium437g00011 Vium-Chr437 37988 44514 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium437g00011 30 363 Tify Gene Family AT3G17860 39.377 1.47e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vium437g00011 tify 2.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium437g00011 K13464 - gmx:100807288 539.265