Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4378g00004 ATGAGACAGGAATGTGGGGGTTTTCAATACCTTCGTCATATAAACAAGCCAACACATACATTATCATGCAAGGGCCGATCTTTTAAGTGTCATTGTCTTTTAGTGCCAGGTCAACCAAATGATCTTCCTGCTGTTAAGGCAGCTGCTACCGTGTTGGCTAGGTCTAGTAATTTGTTACAAAATAATCCTATCATAGTGAAGTTGATTCCTGCAATTGGCGTTATCATTTTTGCAATATGGGGTGTTGGTCCATTATTGTTCCAGACAAGGAAAATACTCCTCCAGAGGAGTGATAATAGTTGGAAGAAAAGTACCACTCACTATATAGTAACTTCTTACCTTCGGCCATTACTGTTATGGACTGGAGCAATACTTATTTGCAGAGCATTGGAGCCATTAATTCTACCTTCAGAACCTGGTCAGGTTGTTAAGGACCGGCTTCTGAATTTTGTGAGATCATTGTCAACGGTTCTGGCCTTTGCCTATTGTTTGTCAAGTGTAATTCAACAATCACAGAAATTCTTTGCGGAGGCTACTGATGCAAGTGAGACGAGAAATATGGGATTCCAATTTGCTGGCAAAGCTGTTTATTCTGCAGTATGGATAGCAGCCTTTTCATTGTTCATGGAATTATTAGGCTTCTCTACCCAGAAATGGGTTACTGCAGGAGGTCTTGGGACAGTTTTGCTGACCCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCAAGTGTGATGATTCATGCAACTCGGCCTTTTGTGGTTAATGAATGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACTGTCGAGCATGTTGGCTGGTGGTCACCAACAATTATTAGAGGTGAAGATCGTGAAGCTGTTCACATTCCAAACCACAAATTTACAGTGAATGTTGTGCGGAACCTTAGTCAAAAAACACATTGGCGAATCAAAACTCATCTAGCCATTAGTCATTTGGATGTAAACAAGATTAATAACATTGTTGCTGACATGCGGAAGGTATTGGCCAAAAATCCTCAAGTTGAGCAGCAGAGACTGCACAGGAGAGTGTTTTTGGACAACATAAATCCTGAAAATCAAGCTCTTTTGATTCTGATATCTTGTTTTGTTAAGACCTCACATTTTGAAGAATATCTTTGTGTTAAGGAAGCAATACTGCTGGATCTTCTTAGAGTTATAGGCCATCACCGAGCCAGACTTGCGACACCGGTTCGTACCCTGCAGAAAGTATACAGTGATGCTGACTTGGATAATATACCGTTTGCAGATTCCACATTTGGTGGAGGTCCGGTCACAGTACCTAACCGCCCATTATTAGTGATTGAACCATCTTACAAAATCAATGGAGATGATAAGATGAAAAGTCGATCTGCACGACCAGTTGTTGATCAAGATAATAAGACATCGAACTCTGATGCAAATGGAAACTCCAAGACACCTGTGACATCTAATTCTGACACAAATGGGAAAACAGTTGTGACACCCAAACCCGACCCAGAAGTGGGTGAGAACAAGCCACTGAAATTAGATTCAAACAAGGAAAACGTGGAGGTTCCAGATTCTTCTTCTAAATCTAAAGTATCTGGTTCGGTAGTAGAAAATTCAGCCCAGAAGGACATAGATTCCAAGCAATCCAAGGGTCAGACCACTAAAAACATAAAGCCAAATATTGAGTCTGAGAATGTAGTGCCCTCCTCATCTAACAGTGCTGACAAAACTGGTGGACTTAATGTTAATATAGCATCAAAACCGCAAGGGGAAAAGAAACCTGCTGCACAGCCTCAAGCATCCAGGACTGTTCTTGAAGAAAATATAGTACTAGGTGTTGCGTTGGAAGGATCAAAGAGGACCCTTCCCATTGATGAGGAGATTGACAATGTAACATCTCGAGAGGCAAAGGAAATGGCTGCATTGCAGGGTGGAAATGGACCTCCAAAGGCTCTAGATGGAAATGACTAG 1971 0.4135 MRQECGGFQYLRHINKPTHTLSCKGRSFKCHCLLVPGQPNDLPAVKAAATVLARSSNLLQNNPIIVKLIPAIGVIIFAIWGVGPLLFQTRKILLQRSDNSWKKSTTHYIVTSYLRPLLLWTGAILICRALEPLILPSEPGQVVKDRLLNFVRSLSTVLAFAYCLSSVIQQSQKFFAEATDASETRNMGFQFAGKAVYSAVWIAAFSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILISCFVKTSHFEEYLCVKEAILLDLLRVIGHHRARLATPVRTLQKVYSDADLDNIPFADSTFGGGPVTVPNRPLLVIEPSYKINGDDKMKSRSARPVVDQDNKTSNSDANGNSKTPVTSNSDTNGKTVVTPKPDPEVGENKPLKLDSNKENVEVPDSSSKSKVSGSVVENSAQKDIDSKQSKGQTTKNIKPNIESENVVPSSSNSADKTGGLNVNIASKPQGEKKPAAQPQASRTVLEENIVLGVALEGSKRTLPIDEEIDNVTSREAKEMAALQGGNGPPKALDGND 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4378g00004 656 MobiDBLite consensus disorder prediction 525 584 - -
Vium4378g00004 656 Pfam Mechanosensitive ion channel 194 400 IPR006685 GO:0016020|GO:0055085
Vium4378g00004 656 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 7 640 IPR045042 -
Vium4378g00004 656 MobiDBLite consensus disorder prediction 505 524 - -
Vium4378g00004 656 SUPERFAMILY Sm-like ribonucleoproteins 237 307 IPR010920 -
Vium4378g00004 656 Gene3D - 253 308 IPR023408 -
Vium4378g00004 656 Gene3D - 149 251 - -
Vium4378g00004 656 MobiDBLite consensus disorder prediction 466 496 - -
Vium4378g00004 656 MobiDBLite consensus disorder prediction 453 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4378g00004 Vium-Chr4378 10399 16198 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4378g00004 10 648 Mechanosensitive Ion Channel Family AT5G10490 61.025 0.0 752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4378g00004 K22047 - gmx:100796304 1135.17