Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4373g00011 ATGGAAAAAGGGCTGCTTCTTTTGTTGTTGCTGCTGTTGTTCATGGTGCTTTCTGCCTTTGCCATGGATGTGGAATATTCACAGTGCAATTGTGATGAGGAAGGGTTTTGGAGCATCCACAACGTCCTGGTTTGCCAGAAAGTGAGCGACTTTTTCATCGCCATTGCATATTTTTCCATTCCCCTTGAGCTCCTTTACTTTGTCAGTCGCTCCAATGTACCCTTTAAATTGGTCTTCCTTCAATTCATTGCGTTCATAGTTCTCTGTGGATTGACCCATTTACTTAATGCCTATACTTACTACGGCCCCCACTCGTTCCGGTTGTTTCTTTCCCTCACTGTTGCTAAGTTCCTCACTGCTCTTGTCTCCTGTGCCACTGCCATTTCCTTTCCCACCCTCATACCTCTTCTGCTGAAAATCAAAGTCAGGGAACTCTTCTTGAGGCAGAATGTGTTGGAATTGGGCCAGGAGGTTGGGATTATGAAGAAACAGGAGGAAGCTAGTTGGCATGTTAGGATGCTCACCTGTGAGATTAGGAAGTCTCTGGATAAGCATACCATCTTGTATACCACACTTGTTGAGCTTTCCAAGGCCTTGGATTTGCACAATTGTGCAGTTTGGATGCCTGATGATGATAGGAAGGAAATGCTCTTGACACATGAGTTGAAACCAAACTCAGCAAGTAGTTTTCACAATTCTATTCCTATTAGTGATCCGGATGTGTTGGACATAAAGAAGAGCAATGGCGTTTGGATTTTGAGGCCTGATTCGAAACTAGGAGCTGCAAGTAGTGGTGGTGGATCTGGGGATTCAGGTGCCGTGGCAGCCATTCGCATGCCCATACTTCATGTTTCCAATTTCAAAGGAGGAACACCAGAGTTAGTTGAAACGGCTTATGCCATACTGGTTTTGGTTCTTCCATATTCAAACTCCAGGACTTGGACCTCCCATGAAATGGAGATAGTGGAAGTGGTTGCTGATCAGGTTGCTGTGGCCTTGTCTCACGCGTCTGTTCTTGAAGAGTCTCAGCTTATGAGCCAGAAACTTGCAGAGCAAAACCGGGCATTACAACAGGCTCAGAAGAATGCAATGATGGCCAGGAAGGCTAGGAGTTCGTTTGAGAAAGTTATGAGTCATGCAATGCGGAGGCCAATGCATTCAATCCTGGGCTTGCTTTCAATGTTTCAAGAGGATAATATAAGGCCAGAACAGAAGATTGTTATTGACTCAATTTTCAAAGTTAGCAATGCCCTATCACGATTGATTAACGATGTGATGGAGATCTCTGCAAATGACAATGGGACCTTCCAGTTGGAGATGAAACCTTTCAATCTGCATTCAATGATGAGGGAAGTTTCTTGCACTACCAAGTGTTTGTGTATATATAAAGGCTTTGGTCTTGAAGTTGATGTAGACAAGTCTTTGCCTGATCTGGTTATTGGTGATGAGGCAAGGTCTTTCCAAGTAATTTTACATATGATTGGCTATTTATTGAACATATATGACAGGGGGACTCTCGTATTTCAAGTTTATCTTGAAAGTGATAGTGGAGATAAAGATGATAAAAATATTGGAAAATGGAGATCAAGCATGCAAAATGCTTATGTACATATAAGATTTAGTTTTCATATAAATGGTATCAGTTCCCAGGCAGATGAAACATTTTCAACAACAAATTGTAATGTTAAAGGGCACTTCAACAATGAATCTAAGGAAGTCCTCAGCTTCAGCATGTGCAAAACACTGGTGCAGATGATGCAAGGTAATATTTGGATATCAACTAACACTATGGGTTTGACACAAGGAATGACGCTTCTGCTCAAGTTTCAGTCAGGATCATCACATGGAAGATTCATTCTTGCTCCTAAAGATTTCTCAAACTCCCAGTTTAAAGGGCTTAAGATTGTGTTAGCTGATGATGATGATGTAAACAGGACCGTGACCAAGAAGCTTCTTGAGAAACTGGGGTGTCAAGTAACTGCTGTTTCATCAGGATTTGAATGTCTTGGTGCTATCAGTGCCTCTGGTAACTTGTTCAAAATTATTCTGTTAGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTTGCAAAAAGGATTAGGAAATTACAAAGCCATAATTGGCCCTTGATCATAGCTTTTACTGCTAGTGCAGAAGAGCACATCAAGGAGAGATGCCTACAGGTGGGAATGAATGGATTCATTCGAAAACCTATCCTCCTCCATGAGATTGCAGATGAACTTAGAGCTGTCCTACAACGTACAGGTGAAAATTTGTGA 2280 0.4193 MEKGLLLLLLLLLFMVLSAFAMDVEYSQCNCDEEGFWSIHNVLVCQKVSDFFIAIAYFSIPLELLYFVSRSNVPFKLVFLQFIAFIVLCGLTHLLNAYTYYGPHSFRLFLSLTVAKFLTALVSCATAISFPTLIPLLLKIKVRELFLRQNVLELGQEVGIMKKQEEASWHVRMLTCEIRKSLDKHTILYTTLVELSKALDLHNCAVWMPDDDRKEMLLTHELKPNSASSFHNSIPISDPDVLDIKKSNGVWILRPDSKLGAASSGGGSGDSGAVAAIRMPILHVSNFKGGTPELVETAYAILVLVLPYSNSRTWTSHEMEIVEVVADQVAVALSHASVLEESQLMSQKLAEQNRALQQAQKNAMMARKARSSFEKVMSHAMRRPMHSILGLLSMFQEDNIRPEQKIVIDSIFKVSNALSRLINDVMEISANDNGTFQLEMKPFNLHSMMREVSCTTKCLCIYKGFGLEVDVDKSLPDLVIGDEARSFQVILHMIGYLLNIYDRGTLVFQVYLESDSGDKDDKNIGKWRSSMQNAYVHIRFSFHINGISSQADETFSTTNCNVKGHFNNESKEVLSFSMCKTLVQMMQGNIWISTNTMGLTQGMTLLLKFQSGSSHGRFILAPKDFSNSQFKGLKIVLADDDDVNRTVTKKLLEKLGCQVTAVSSGFECLGAISASGNLFKIILLDLHMPEMDGFEVAKRIRKLQSHNWPLIIAFTASAEEHIKERCLQVGMNGFIRKPILLHEIADELRAVLQRTGENL 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4373g00011 759 Gene3D - 433 612 IPR036890 -
Vium4373g00011 759 Gene3D - 333 432 - -
Vium4373g00011 759 FunFam Ethylene receptor 4 336 430 - -
Vium4373g00011 759 CDD REC_ETR-like 633 748 - -
Vium4373g00011 759 SUPERFAMILY CheY-like 629 754 IPR011006 -
Vium4373g00011 759 ProSiteProfiles Histidine kinase domain profile. 376 613 IPR005467 -
Vium4373g00011 759 PIRSF Ethylen_sen_hybr_HK 1 758 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vium4373g00011 759 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 24 755 - -
Vium4373g00011 759 Pfam GAF domain 185 333 IPR003018 GO:0005515
Vium4373g00011 759 Gene3D - 633 758 - -
Vium4373g00011 759 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 438 595 IPR036890 -
Vium4373g00011 759 ProSiteProfiles Response regulatory domain profile. 634 752 IPR001789 GO:0000160
Vium4373g00011 759 Pfam His Kinase A (phospho-acceptor) domain 370 434 IPR003661 GO:0000155|GO:0007165
Vium4373g00011 759 Gene3D - 174 332 IPR029016 -
Vium4373g00011 759 Pfam Response regulator receiver domain 635 747 IPR001789 GO:0000160
Vium4373g00011 759 CDD HATPase_ETR2_ERS2-EIN4-like 475 607 - -
Vium4373g00011 759 Coils Coil 339 369 - -
Vium4373g00011 759 CDD HisKA 368 429 IPR003661 GO:0000155|GO:0007165
Vium4373g00011 759 FunFam Ethylene receptor 631 755 - -
Vium4373g00011 759 SMART gaf_1 183 343 IPR003018 GO:0005515
Vium4373g00011 759 SMART REC_2 633 748 IPR001789 GO:0000160
Vium4373g00011 759 SUPERFAMILY GAF domain-like 186 336 - -
Vium4373g00011 759 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 354 434 IPR036097 GO:0000155|GO:0007165
Vium4373g00011 759 SMART HisKA_10 369 434 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4373g00011 Vium-Chr4373 100963 104533 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4373g00011 23 757 Miscellaneous Gene Families AT3G04580 60.910 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium4373g00011 GAF 2e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4373g00011 K14509 - gmx:100805023 1312.36