Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4373g00010 ATGGAAAGAGGACTGCTTCTTTTGTTTTTCTTGCTGTTGGTTATGGTGCTCTCTGTCTTTGCTATCGAAGTGGAATATTCACACTGCAATTGTGATGACGAAGGGCTTTGGAGCATCCACAACGTCTTGGTTTGCCAGAAAGTGAGTGACTTTTTCATTGCCATTGCATATTTTTCCATTCCCCTTGAGCTCCTTTACTTTGTCAGCCGTTCCAATGTCCCCTTTAAATTGGTCTTTCTTCAATTCATTGCGTTCATAGTTCTCTGTGGATTGACCCATTTACTCAATGCCTATACTTACTATGGCCCCCACTCTTTCCGGTTGTTTCTTTCCCTCACTGTTGCTAAGTTTCTCACTGCTCTTGTCTCCTGTGCCACTGCCATTTCTTTTCCCACCCTCATACCTCTTCTGCTGAAAATCAAAGTCAGGGAGCTCTTCTTGAGGCAGAATGTGTTGGAATTGGGCCAGGAGGTTGGGATCATGAAGAAACAGGAGGAAGCTAGATGGCATGTTAGGATGCTCACCTGTGAGATTAGGAAGTCTCTGGATAAGCATACCATCTTGTATACCACACTTGTTGAGCTTTCCAAGACCTTGGATTTGCACAATTGTGCAGTTTGGATGCCTGATGATGATAGGAGAGAAATGCTTTTGACACATGAGTTGAAATCAAACTCAGCAAGTAGTTTTCACAATTCTATTCCTATTAGTGATCCAGATGTGTTGGACGTAAAGAATAGCAAAGGGGTGTGGATTTTGAGGCCTGATTCGGCACTCGGAGCTGCAAGTAGCGGTGGTGGATCTGGGGATTCAGGTGCCGTGGCAGCCATCCGCATGCCGATACTTCATGTTTCCAATTTCAAAGGAGGGACACCAGAGATGGTTGAGACATCTTATGCTATACTGGTTTTGGTTCTTCCGAATTCAAACTCCAGGTCTTGGACCTCCCATGAAATGGAGATAGTGGAAGTGGTTGCTGATCAGGTTGCTGTGGCTTTGTCTCACGCGTCTGTTCTTGAAGAGTCTCAGCTTATGAGCCAGAAACTTGCAGAGCAAAACCGGGCTTTGCAACAGGCCCAGAAGAATGCAATGATGGCCAGGAAGGCAAGGAGCTCGTTTGAGAAAGTTATGAGTCATGGAATGCGGAGGCCGATGCATTCTATCCTGGGTTTGCTTTCACTGTTTCAAGAGGATAATAGTATAAGGCCAGAACAGAAGATTGTTATTGACTCAATTTTCAAAGTTAGCAATGCACTCTCACGATTGATTAATGATGTGATGGAGATTTCCACGAATGACAATGGAAACTTCCGGTTGGAGATGAAACCTTTCAGTCTGCATTCAATGATGAGGGAAGTTTCTTGCACTACCAAGTGTTTGTGTATATATAAAGGCTTTGGTCTTGAAGTTGATGTTGACAAGTCTTTGCCTGATCTGGTCGCTGGTGATGAGGCAAGGTCTTTCCAAGTAATTTTACATATGATTGGCTATTTATTGAACCTTTGTGACAAAGGAACACTCATATTTCAAGTTTATCTTGAAAGTGGTAGTGGAGATAAAGATGATAGAAGTGTTGCAATATGGAGGTCAAACATGCAAAATGACTATGTACATATAAAATTTAATTTTCGAGTAAATGGTATTAGTTCCCAGTCAGATGAATCATTTTCAACAACAAATTATTCTTGTAGAAGGCACCACAACAATGAACCTAAGGAAGGCCTGAGCTTCAGCATGTGCAAAACAATAGTGCAGATGATGCAAGGTAATATTTGGATGTCAACTAACTCTATGGGTGTGACACAAGGAATGACACTTCTTCTCAGGTTTCCGACAGGATCATATCATGGAAGATTCATTCTTGCTACCAAAGATATTTCAAACTCCCAGTTTAGAGGGCTTAAGGTTGTGTTAGCTGATGATGATGATGTAAACAGGACTGTGACCAAGAAGCTGCTTGAGAAACTGGGGTGTCAAGTAACTGCTGTTTCATCAGGATTTGAATGTCTTAGTGCTGTAAGTGCCTCTGGTAACTCCATCAAAATTGTTCTACTGGATCTTCACATGCCCGAAATGGATGGTTTTGAAGTTACAAGAAGGATTCGAAAATTCCAAAGCCGTAATTGGCCCTTGATCGTGGCTGTGACTGCAAGTGCAGAAGAACACATCAAGGAGAAATGTCTACAAGTGGGAATGAATGGACTGATTCAAAAACCTATCCTTCTTCATGAGATAGCAGATGAACTTCGAACAGTCCTGCAACGTGCAGGTGAAAAATTGTGA 2283 0.4236 MERGLLLLFFLLLVMVLSVFAIEVEYSHCNCDDEGLWSIHNVLVCQKVSDFFIAIAYFSIPLELLYFVSRSNVPFKLVFLQFIAFIVLCGLTHLLNAYTYYGPHSFRLFLSLTVAKFLTALVSCATAISFPTLIPLLLKIKVRELFLRQNVLELGQEVGIMKKQEEARWHVRMLTCEIRKSLDKHTILYTTLVELSKTLDLHNCAVWMPDDDRREMLLTHELKSNSASSFHNSIPISDPDVLDVKNSKGVWILRPDSALGAASSGGGSGDSGAVAAIRMPILHVSNFKGGTPEMVETSYAILVLVLPNSNSRSWTSHEMEIVEVVADQVAVALSHASVLEESQLMSQKLAEQNRALQQAQKNAMMARKARSSFEKVMSHGMRRPMHSILGLLSLFQEDNSIRPEQKIVIDSIFKVSNALSRLINDVMEISTNDNGNFRLEMKPFSLHSMMREVSCTTKCLCIYKGFGLEVDVDKSLPDLVAGDEARSFQVILHMIGYLLNLCDKGTLIFQVYLESGSGDKDDRSVAIWRSNMQNDYVHIKFNFRVNGISSQSDESFSTTNYSCRRHHNNEPKEGLSFSMCKTIVQMMQGNIWMSTNSMGVTQGMTLLLRFPTGSYHGRFILATKDISNSQFRGLKVVLADDDDVNRTVTKKLLEKLGCQVTAVSSGFECLSAVSASGNSIKIVLLDLHMPEMDGFEVTRRIRKFQSRNWPLIVAVTASAEEHIKEKCLQVGMNGLIQKPILLHEIADELRTVLQRAGEKL 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4373g00010 760 Gene3D - 161 334 IPR029016 -
Vium4373g00010 760 Gene3D - 434 614 IPR036890 -
Vium4373g00010 760 Pfam GAF domain 185 333 IPR003018 GO:0005515
Vium4373g00010 760 SUPERFAMILY GAF domain-like 186 336 - -
Vium4373g00010 760 SMART HisKA_10 369 435 IPR003661 GO:0000155|GO:0007165
Vium4373g00010 760 CDD HATPase_ETR2_ERS2-EIN4-like 476 608 - -
Vium4373g00010 760 CDD HisKA 368 430 IPR003661 GO:0000155|GO:0007165
Vium4373g00010 760 SMART gaf_1 183 343 IPR003018 GO:0005515
Vium4373g00010 760 FunFam Ethylene receptor 4 336 431 - -
Vium4373g00010 760 PIRSF Ethylen_sen_hybr_HK 2 760 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vium4373g00010 760 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 354 436 IPR036097 GO:0000155|GO:0007165
Vium4373g00010 760 ProSiteProfiles Response regulatory domain profile. 635 753 IPR001789 GO:0000160
Vium4373g00010 760 ProSiteProfiles Histidine kinase domain profile. 376 614 IPR005467 -
Vium4373g00010 760 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 439 611 IPR036890 -
Vium4373g00010 760 SMART REC_2 634 749 IPR001789 GO:0000160
Vium4373g00010 760 Gene3D - 634 759 - -
Vium4373g00010 760 Coils Coil 339 369 - -
Vium4373g00010 760 CDD REC_ETR-like 634 749 - -
Vium4373g00010 760 Pfam His Kinase A (phospho-acceptor) domain 370 435 IPR003661 GO:0000155|GO:0007165
Vium4373g00010 760 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 24 757 - -
Vium4373g00010 760 Pfam Response regulator receiver domain 636 748 IPR001789 GO:0000160
Vium4373g00010 760 FunFam Ethylene receptor 632 756 - -
Vium4373g00010 760 SUPERFAMILY CheY-like 630 755 IPR011006 -
Vium4373g00010 760 Gene3D - 335 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4373g00010 Vium-Chr4373 94725 98276 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4373g00010 25 758 Miscellaneous Gene Families AT3G04580 61.714 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium4373g00010 GAF 4.8e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4373g00010 K14509 - gmx:100805023 1306.2