Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4373g00009 ATGGAACCTAATGACAACCAACTCACCTCCTTCTTCCACCACCACCACCCCCACCACCACCATCACCACCAGCCCCAACCACCGCCCCAGACCGCCGCAGCCACCACCGCCTCTCCGACCAACGGCCTCTTGCCCAACGCCGACGCCTCACACATACTCTACCCTCACTCCGTGGCCTCGGCTGTCTCGTCGCAGCTGGAACCGGCCAAGAGGAAGCGGGGGCGCCCGAGGAAGTACGGCACGCCGGAGCAGGCTCTTGCCGCCAAGAAAGCCGCTACGGCTTCGTCTCAGTCGTTCTCCGCGGACAAGAAGCCCCACTCACCAACCTTCCATTCTTCTTCATCTTTCACATCCAAAAAATCCCATTCCTTCGCTCTAGGCAATGCAGGGCAAGGGTTCACTCCGCATGTCATTGCCGTTGCTGCTGGTGAGGATGTTGGCCAGAAAATTATGTTATTCATGCAACAAAGTAGGCGTGAAATGTGTATTCTCTCTGCATCTGGTTCCATCTCTAATGCCTCTCTTCGCCAGCCAGCAACCTCAGGAGGCAACATTACATATGAGGGTCGATTTGAGATTATTTCACTTACTGGATCTTACGTCCGGAATGAGATTGGAACTCGAACTGGTGGTCTAAGTGTATGTTTATCTAACACTGATGGACAAATCATAGGCGGTGGAGTTGGTGGGCCGCTTAAAGCAGCTGGTCCAGTTCAGGTCATCGTTGGAACATTTTTTATTGACAACAAGAAGGATTCTAGCCCAAAAGTTGATGCCTCTGCAAGTAAGTTGCCACCACCACCTGTTAGTGAACCGGTATCAAGTTTAGGTTTCCGCCAATCCGTCGACTCTCCCAGTGGAAATCCAATCCGCGGAAATGATGAGCATCAAGCCATGGGGGGAAGTCATTTCATGATTCAACAGCTTGGTTTGCAGGGGACGCCTCCCCGGTCCACAGACTGGGCTCGTCCGGATTCAAGAAATTCCAGTTTTGAGCTGACAGGAAGGACAGGTCATGGGTCGCACCAGTCTCCTGAGAATGGGGGCTATGAGCAAATTCCCGATTGA 1068 0.53 MEPNDNQLTSFFHHHHPHHHHHHQPQPPPQTAAATTASPTNGLLPNADASHILYPHSVASAVSSQLEPAKRKRGRPRKYGTPEQALAAKKAATASSQSFSADKKPHSPTFHSSSSFTSKKSHSFALGNAGQGFTPHVIAVAAGEDVGQKIMLFMQQSRREMCILSASGSISNASLRQPATSGGNITYEGRFEIISLTGSYVRNEIGTRTGGLSVCLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFIDNKKDSSPKVDASASKLPPPPVSEPVSSLGFRQSVDSPSGNPIRGNDEHQAMGGSHFMIQQLGLQGTPPRSTDWARPDSRNSSFELTGRTGHGSHQSPENGGYEQIPD 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4373g00009 355 MobiDBLite consensus disorder prediction 307 348 - -
Vium4373g00009 355 Pfam Plants and Prokaryotes Conserved (PCC) domain 135 245 IPR005175 -
Vium4373g00009 355 MobiDBLite consensus disorder prediction 90 117 - -
Vium4373g00009 355 Gene3D - 135 260 - -
Vium4373g00009 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 19 295 IPR039605 GO:0003680
Vium4373g00009 355 MobiDBLite consensus disorder prediction 274 291 - -
Vium4373g00009 355 CDD DUF296 134 245 IPR005175 -
Vium4373g00009 355 ProSiteProfiles PPC domain profile profile. 129 267 IPR005175 -
Vium4373g00009 355 SUPERFAMILY AF0104/ALDC/Ptd012-like 131 245 - -
Vium4373g00009 355 MobiDBLite consensus disorder prediction 28 45 - -
Vium4373g00009 355 MobiDBLite consensus disorder prediction 1 48 - -
Vium4373g00009 355 MobiDBLite consensus disorder prediction 61 117 - -
Vium4373g00009 355 MobiDBLite consensus disorder prediction 252 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4373g00009 Vium-Chr4373 85262 91370 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4373g00009 46 355 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 50.149 1.10e-85 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4373g00009 - - gmx:100816781 534.258