Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4373g00008 ATGGAACCTAATGACAACCAACTCACCTCCTTCTTCCACCACCACCACCCCCACCACCACCATCACCACCAGCCCCAACCACCGCCCCAGACCGCCGCAGCCACCACCGCCTCTCCGACCAACGGCCTCTTGCCCAACGCCGACGCCTCACACATACTCTACCCTCACTCCGTGGCCTCGGCTGTCTCGTCGCAGCTGGAACCGGCCAAGAGGAAGCGGGGGCGCCCGAGGAAGTACGGCACGCCGGAGCAGGCTCTTGCCGCCAAGAAAGCCGCTACGGCTTCGTCTCAGTCGTTCTCCGCGGACAAGAAGCCCCACTCACCAACCTTCCATTCTTCTTCATCTTTCACATCCAAAAAATCCCATTCCTTCGCTCTAGGCAATGCAGGGCAAGGGTTCACTCCGCATGTCATTGCCGTTGCTGCTGGTGAGGATGTTGGCCAGAAAATTATGTTATTCATGCAACAAAGTAGGCGTGAAATGTGTATTCTCTCTGCATCTGGTTCCATCTCTAATGCCTCTCTTCGCCAGCCAGCAACCTCAGGAGGCAACATTACATATGAGGGTCGATTTGAGATTATTTCACTTACTGGATCTTACGTCCGGAATGAGATTGGAACTCGAACTGGTGGTCTAAGTGTATGTTTATCTAACACTGATGGACAAATCATAGGCGGTGGAGTTGGTGGGCCGCTTAAAGCAGCTGGTCCAGTTCAGGTCATCGTTGGAACATTTTTTATTGACAACAAGAAGGATTCTAGCCCAAAAGTTGATGCCTCTGCAAGTAAGTTGCCACCACCACCTGTTAGTGAACCGGTATCAAGTTTAGGTTTCCGCCAATCCGTCGACTCTCCCAGTGGAAATCCAATCCGCGGAAATGATGAGCATCAAGCCATGGGGGGAAGTCATTTCATGATTCAACAGCTTGGTTTGCAGGGGACGCCTCCCCGGTCCACAGACTGGGCTCGTCCGGATTCAAGAAATTCCAGTTTTGAGCTGACAGGTTTCCTATCCGCAGGAAGGACAGGTCATGGGTCGCACCAGTCTCCTGAGAATGGGGGCTATGAGCAAATTCCCGATTGA 1083 0.53 MEPNDNQLTSFFHHHHPHHHHHHQPQPPPQTAAATTASPTNGLLPNADASHILYPHSVASAVSSQLEPAKRKRGRPRKYGTPEQALAAKKAATASSQSFSADKKPHSPTFHSSSSFTSKKSHSFALGNAGQGFTPHVIAVAAGEDVGQKIMLFMQQSRREMCILSASGSISNASLRQPATSGGNITYEGRFEIISLTGSYVRNEIGTRTGGLSVCLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFIDNKKDSSPKVDASASKLPPPPVSEPVSSLGFRQSVDSPSGNPIRGNDEHQAMGGSHFMIQQLGLQGTPPRSTDWARPDSRNSSFELTGFLSAGRTGHGSHQSPENGGYEQIPD 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4373g00008 360 Gene3D - 135 260 - -
Vium4373g00008 360 SUPERFAMILY AF0104/ALDC/Ptd012-like 131 245 - -
Vium4373g00008 360 MobiDBLite consensus disorder prediction 90 117 - -
Vium4373g00008 360 MobiDBLite consensus disorder prediction 252 297 - -
Vium4373g00008 360 MobiDBLite consensus disorder prediction 274 291 - -
Vium4373g00008 360 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 19 291 IPR039605 GO:0003680
Vium4373g00008 360 CDD DUF296 134 245 IPR005175 -
Vium4373g00008 360 Pfam Plants and Prokaryotes Conserved (PCC) domain 135 245 IPR005175 -
Vium4373g00008 360 ProSiteProfiles PPC domain profile profile. 129 267 IPR005175 -
Vium4373g00008 360 MobiDBLite consensus disorder prediction 311 353 - -
Vium4373g00008 360 MobiDBLite consensus disorder prediction 28 45 - -
Vium4373g00008 360 MobiDBLite consensus disorder prediction 1 48 - -
Vium4373g00008 360 MobiDBLite consensus disorder prediction 311 360 - -
Vium4373g00008 360 MobiDBLite consensus disorder prediction 61 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4373g00008 Vium-Chr4373 85260 91370 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4373g00008 46 360 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 50.448 3.98e-84 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4373g00008 - - gmx:100816781 528.094