Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4373g00004 ATGTTCAAACTATCGCGGGTGCTTCATCTGACCTCCACTTCTAGGCATAGGCTGTTGGAAGTGTTGTCGTCTAGGAATGTTGAAGTTGGAGACTCTCTGTGGGATCGGCGTGATTTTACCCATTCAGCCGGCATTTCTACTGCTACAAATAATTATGCTGCTAAAGGGTATGCCTCGGATCGTATATTTGCTCCTTATACTGTTTACAAGGGCAAAGCGGCATTCTCGTTGAGTCCCTGTCTTCCAACTTTTACTAAGTTGGATTCCGGGACTGTTGTAGTTGATCGACGTGGTTCAATCATGATGACTTTCATGCATTCTATTGGAGAACGCAAATATGACTGGGAGAAGAGACAGAGATTTGCTCTCTCAGCCACTGAAGTTGGTTCTTTGATAAATATGGGCTCTCAAGATTCCTCTGAATTCTTTCATGACCCTTCAATGTTATCAAGTAATGCTGGCCAAGTAAGAAAGAGCTTATCTATTAAGCCCAATGCAAACAGCAATGGATACTTTGTGTCATTGAATGTTGTCAACAACCTGTTAAACACCAAAGACTACTTCAGTGTTCCTGTCACAGCTGCCGAGTTTGCTGTAATGAAGACTGCTTGCAGTTTTGCATTGCCACACATTATGGGTTGGGACCAGATAACTAATCCGCAATCCAGAGGCACAGTGGGCATTCAACGGAAGGGTGGCTCTCAAGTTTTAGATTTGGAATGGGAAAAATGA 732 0.4331 MFKLSRVLHLTSTSRHRLLEVLSSRNVEVGDSLWDRRDFTHSAGISTATNNYAAKGYASDRIFAPYTVYKGKAAFSLSPCLPTFTKLDSGTVVVDRRGSIMMTFMHSIGERKYDWEKRQRFALSATEVGSLINMGSQDSSEFFHDPSMLSSNAGQVRKSLSIKPNANSNGYFVSLNVVNNLLNTKDYFSVPVTAAEFAVMKTACSFALPHIMGWDQITNPQSRGTVGIQRKGGSQVLDLEWEK 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4373g00004 243 Gene3D Transcriptional Coactivator Pc4; Chain A 52 224 IPR009044 GO:0003677|GO:0006355
Vium4373g00004 243 SUPERFAMILY ssDNA-binding transcriptional regulator domain 59 221 IPR009044 GO:0003677|GO:0006355
Vium4373g00004 243 Pfam Whirly transcription factor 68 202 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vium4373g00004 243 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 38 243 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4373g00004 Vium-Chr4373 58809 63065 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4373g00004 37 243 Whirly Transcription Factor Family AT1G71260 60.849 8.09e-91 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Vium4373g00004 Whirly 6e-53 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4373g00004 K26561 - gmx:100817863 395.971