Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4372g00008 ATGGACTCTCAGCGCCGCACCGTCCGCACCCTAGTCTCCAAGCTCAGCTCCGTCTCCGAAGCCGCTCGCGTCGACGCCCTCTGCCAGCTTCGCCTCATGTCCAAGCAGGACCCGATAACCCGACCCGTAATCTCCGAAGCTGGCGCAATCCCTTATATAGCGGAAACCCTCTACTCTTCCTCTCACACTTCCCAAGAGAACGCAGCGGCCACGCTGCTCAACCTCTCCATCACTGAAAAGGAGCCTCTCATGTCGACGCGTGGCGTCCTCGACGCGATCGCACACGTGATCTCTCACCACGCCACCGCCTCATCACCCGCCGCCGTACAGTCCGCTGCCGCCACCATACATAGCCTCCTCTCATCCGTCGACGCCTACCGTCCCGTCGTCGGCTCGAAGCGAGAGATCGTGTACTCGCTCGTCGATATCCTCCGTTGCCACGTGTCCTCGCCTCCGCGCACCATCAAGGACGCGCTCAAGGCGCTCTTCGCCATCGCGCTCCACCCGCTCAACCGCGCCACCATGATCAACCTCGGCGTGGTTCCCGCGCTTTTTTCGCTCGTCGTTAAGGATGGTAGGGTCGGCATCGTGGAGGACGCGACGGCGGTGGTTGCGCAGGTTGCGGGATGTGAGGATGCCGCCGAGGCCTTCCGTAAAGCATCTGGCGGCCTCGGCGTGCTCGCCGACCTTCTTGACCTCGCCACTGCCGCCAGCATGCGCACCAAGGAGAATGCCGTCTCGGCTCTCCTCAATCTTGTGCGCTGTGGTGGGGAGAAGGTCGCCGCAGATGTGCGCGACGCGGTGGCGTTCGGAGCGCTGGACGGAATTAGGGACGTTAGGGATGGCGGTAGTGGCAAGGGGAGGACAAAGGCGGCGGAATTGTTGAAGGTCTTGCTCGGTGAGAGCAATGGCACTGTCGATGTGGCGTTGAGTAGTGATAACTGTTCTTCCTTTGGTTCCTCGAGGAATCATGATTCGGATTGA 984 0.6159 MDSQRRTVRTLVSKLSSVSEAARVDALCQLRLMSKQDPITRPVISEAGAIPYIAETLYSSSHTSQENAAATLLNLSITEKEPLMSTRGVLDAIAHVISHHATASSPAAVQSAAATIHSLLSSVDAYRPVVGSKREIVYSLVDILRCHVSSPPRTIKDALKALFAIALHPLNRATMINLGVVPALFSLVVKDGRVGIVEDATAVVAQVAGCEDAAEAFRKASGGLGVLADLLDLATAASMRTKENAVSALLNLVRCGGEKVAADVRDAVAFGALDGIRDVRDGGSGKGRTKAAELLKVLLGESNGTVDVALSSDNCSSFGSSRNHDSD 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4372g00008 327 SMART arm_5 210 254 IPR000225 GO:0005515
Vium4372g00008 327 SMART arm_5 168 209 IPR000225 GO:0005515
Vium4372g00008 327 SMART arm_5 37 77 IPR000225 GO:0005515
Vium4372g00008 327 Gene3D - 2 279 IPR011989 -
Vium4372g00008 327 SUPERFAMILY ARM repeat 7 299 IPR016024 -
Vium4372g00008 327 FunFam ARM repeat superfamily protein 2 303 - -
Vium4372g00008 327 PANTHER U BOX DOMAIN-CONTAINING 7 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4372g00008 Vium-Chr4372 89049 90847 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4372g00008 8 298 U-box Gene Family AT1G23030 33.447 3.23e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4372g00008 - - gmx:100787115 529.25