Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4372g00006 ATGGCTGTGACTGCGTTTGATTCTTTTGCCACAGTTGTTCCTGTTCGAGGTGCCTCTATGTCTCCCACATTAAATCCTAAAACTGGTTCTCTGATGGGAAATCAATTTTGCCTTTTGGACTATAAATTTTCAAATGGCGATGTGGTAGTCTTCCGCTCCCCAACGAATCACAAGGAGACACACATAAAAACAATAGCTGCATTACCTGGTGAATGGTATGGCACTCATCATAACAACGATGTGATTAAGATCCCATCAGGACATTGTTGGGTTGAGGGAGACAACTCAGCCTCTAGCATTGATTCAAAGTCATTTGGACCGATTCCTTTGGCCCTAATTCGGGGAAGGGTTACCCATGTTGTGTGGCCTCCTCAAAGAATAGGAAGTGTCAAGAGTACTCCACAACAAAGATTATCTTCTGTATTGGAATAA 432 0.4282 MAVTAFDSFATVVPVRGASMSPTLNPKTGSLMGNQFCLLDYKFSNGDVVVFRSPTNHKETHIKTIAALPGEWYGTHHNNDVIKIPSGHCWVEGDNSASSIDSKSFGPIPLALIRGRVTHVVWPPQRIGSVKSTPQQRLSSVLE 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4372g00006 143 FunFam Mitochondrial inner membrane protease subunit 6 135 - -
Vium4372g00006 143 SUPERFAMILY LexA/Signal peptidase 10 130 IPR036286 -
Vium4372g00006 143 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 2 138 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Vium4372g00006 143 Gene3D Umud Fragment, subunit A 7 138 - -
Vium4372g00006 143 Pfam Signal peptidase, peptidase S26 79 122 IPR019533 GO:0004252|GO:0006465
Vium4372g00006 143 Pfam Signal peptidase, peptidase S26 8 71 IPR019533 GO:0004252|GO:0006465
Vium4372g00006 143 CDD S26_SPase_I 12 117 IPR019533 GO:0004252|GO:0006465
Vium4372g00006 143 PRINTS Bacterial leader peptidase 1 (S26A) family signature 61 73 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium4372g00006 143 PRINTS Bacterial leader peptidase 1 (S26A) family signature 8 24 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium4372g00006 143 PRINTS Bacterial leader peptidase 1 (S26A) family signature 84 103 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4372g00006 Vium-Chr4372 51831 53750 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4372g00006 20 134 MADS-box Gene Family AT1G29960 37.190 8.13e-21 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4372g00006 K09648 - gmx:100527429 238.039