Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4372g00005 ATGGGGTCATCAAAAAGTTTTCTATGGAACTGCACTAAAAAATTTGTCACACCTGCTGTCATGGCTGTGACTGCGTTTGATTCTTTTGCCACAGTTGTTCCTGTTCGAGGTGCCTCTATGTCTCCCACATTAAATCCTAAAACTGGTTCTCTGATGGGAAATGTTTTTGGTATTTTTCTTGCTGAAGGAGTTCATAATAAAATATTACTTTTACAATTGCAGATTTTGTTGCAATTTTGCCTTTTGGACTATAAATTTTCAAATGGCGATGTGGTAGTCTTCCGCTCCCCAACGAATCACAAGGAGACACACATAAAAACAATAGCTGCATTACCTGGTGAATGGTATGGCACTCATCATAACAACGATGTGATTAAGATCCCATCAGGACATTGTTGGGTTGAGGGAGACAACTCAGCCTCTAGCATTGATTCAAAGTCATTTGGACCGATTCCTTTGGCCCTAATTCGGGGAAGGGTTACCCATGTTGTGTGGCCTCCTCAAAGAATAGGAAGTGTCAAGAGTACTCCACAACAAAGATTATCTTCTGTATTGGAATAA 561 0.4029 MGSSKSFLWNCTKKFVTPAVMAVTAFDSFATVVPVRGASMSPTLNPKTGSLMGNVFGIFLAEGVHNKILLLQLQILLQFCLLDYKFSNGDVVVFRSPTNHKETHIKTIAALPGEWYGTHHNNDVIKIPSGHCWVEGDNSASSIDSKSFGPIPLALIRGRVTHVVWPPQRIGSVKSTPQQRLSSVLE 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4372g00005 186 CDD S26_SPase_I 32 160 IPR019533 GO:0004252|GO:0006465
Vium4372g00005 186 Gene3D Umud Fragment, subunit A 27 180 - -
Vium4372g00005 186 SUPERFAMILY LexA/Signal peptidase 30 173 IPR036286 -
Vium4372g00005 186 PRINTS Bacterial leader peptidase 1 (S26A) family signature 127 146 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium4372g00005 186 PRINTS Bacterial leader peptidase 1 (S26A) family signature 28 44 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium4372g00005 186 PRINTS Bacterial leader peptidase 1 (S26A) family signature 104 116 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium4372g00005 186 Pfam Signal peptidase, peptidase S26 10 114 IPR019533 GO:0004252|GO:0006465
Vium4372g00005 186 Pfam Signal peptidase, peptidase S26 123 165 IPR019533 GO:0004252|GO:0006465
Vium4372g00005 186 FunFam Mitochondrial inner membrane protease subunit 26 178 - -
Vium4372g00005 186 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 1 181 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4372g00005 Vium-Chr4372 42912 45504 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4372g00005 40 177 MADS-box Gene Family AT1G29960 34.722 5.38e-17 71.6