Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4372g00002 ATGACATTGGGGACTATTTTTAAGAGCTTGTGTTATATACATGTTGTCAAGACCTATGTGATCGACCCTCTTGGGACCTTTGGTCCCAGCATGCTTCCTACAATCGATTCGACAGCAAGTATCTTCTTGACTGAAAAGATCTCAACCCGATTTGGTAAAGTTGATCGTGAAGATATTATAGTCTTTTGCGACCCTCAAAAACCTGGGCGTTATCTGACCAAACGCGTGATTGGGTTGGAGGGTGATAGGATTACGTACAGTTCCAATCCTGAGACCAATGACTTGGTGGATGATAATTTTACACACATTTCCTATCCCGAGAACAATGATAAGCCTCAGACGGTTGTGGTTCCAAAGGGTAGCATTTGGGTAGAGGGAGATAACAAGTCTAATAGCCGTGATTCTAGAAAATTTGGTCCTGTTCCTTATGGCCTTGTTGACAGCAAGATATTTTGGAGGATATATCCATTTCAATATTTTGGACCTTTCTGGAATAAATGA 501 0.4132 MTLGTIFKSLCYIHVVKTYVIDPLGTFGPSMLPTIDSTASIFLTEKISTRFGKVDREDIIVFCDPQKPGRYLTKRVIGLEGDRITYSSNPETNDLVDDNFTHISYPENNDKPQTVVVPKGSIWVEGDNKSNSRDSRKFGPVPYGLVDSKIFWRIYPFQYFGPFWNK 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4372g00002 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 72 84 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium4372g00002 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 19 35 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium4372g00002 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 117 136 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium4372g00002 166 CDD S26_SPase_I 28 146 IPR019533 GO:0004252|GO:0006465
Vium4372g00002 166 NCBIfam signal peptidase I 4 158 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium4372g00002 166 ProSitePatterns Signal peptidases I signature 3. 122 135 IPR019758 GO:0004252|GO:0016020
Vium4372g00002 166 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 4 163 - -
Vium4372g00002 166 Gene3D Umud Fragment, subunit A 15 165 - -
Vium4372g00002 166 SUPERFAMILY LexA/Signal peptidase 18 164 IPR036286 -
Vium4372g00002 166 Pfam Signal peptidase, peptidase S26 5 147 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4372g00002 Vium-Chr4372 27833 30109 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4372g00002 31 163 MADS-box Gene Family AT1G29960 42.857 2.98e-34 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4372g00002 K09647 - gmx:100526949 226.483