Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium436g00016 ATGGAGGAGGTTTTTGTTGCATTGAAACTGGTTTCAGTTGCTGTTGTGGGGATTCTAAGCTGGGTACTCTATGGGTATGGTCGTGTGTGGTATGAGTCTCAAAGGGTGAGAAAAAGGATACTAAAGCAAGGAATAAAAGGGCCTCCACCTTCTTTTCTGCATGGAAATCTGCCTGATATTCTGAAAATTCAAGCTCAGGCTGCTAGCCAAGCCAAAGCTTCTGCTTCAACCTCCAACCATTCTGATCAGCTTGTGGCTCATGACTACACTGCAACCCTCTTCCCTTATTTTGAACACTGGAGGAAAGAATATGGTTTACTGTATACTTACTCCACAGGGCTGAAGCAGCACCTGTATGTGAATCAACCAGATCTAATAAAGGAATTGAATCATTGCATCACTTTGGTTCTGGGTAAGCCTGGTTACTTAACAAACAAACTTGCACCTATGCTTGGCAATGGCGTTTTGAGAGCCAATGGTAACAGTTGGGCACAGCAGAGGAAACTTGTTGCAGCTGAATTCTTCATGGACAAAGTTAAGGGTATGGTGGACTCAATGATAGAGTCAACGCAGCCATTACTACTGAAATGGGAGCAAATTATTGAGAGCCAAGGAGGGGCCACAGCTGAAATTAAAGTGGATAAAGATCTCATAGGTTTATCAGCTGATGTTATTTCAAGGGTTTCATTTGGCCATTCTTATTATTCTAAGGGAAAGGAAGTCTTCTCCAAGCTTAGAAGAATACAGAAGGCCCTGACCAAGGATACTGGCTTCCTTTTTGGCATCAGTTTTCGTGAGAAACTGAATTTCTGGTCAAATAAGAAAAATGAGATAGCGAATTTGGAGAAAGAGATAGAGTCACTGATATGGGAGTTAGTGGAGGAACGCAAGAAAGAATGCTCAGAGGCATCCTCCTCATCACAGAAGGATTTGATGCAGTTACTGTTGGAAGCAGCCACGAGTGATCAGAGTCTGGGGAAGGACTTTTCCAAAAGCTTCATTGTGGATAACTGCAAAAACATTTACTTTGCTGGCCATGAAACCACTTATGTAGCAGCCTCCTGGTGTTTGATGCTTCTTGGTTTGCACACAGATTGGCAGACTCGTATAAGGGCTGAGGTGGCTGAACATTGCCCCAATGGTATACCAAATGCAGATTCTCTCCCTCAGTTGAAAACGCTGGGTATGGTGATTCAAGAAACGCTACGTTTATACCCACCAGCATCCTTTGTGTCAAGGGAGGCATATGAAGATATCCAAATTGGACACCTGAATGTTCCTAAGGGTGCTTATCTGTGGACTCTGATCCCAACCCTACACAGAGATCCTGAAGTATGGGGACCAGATGCTAATGAGTTTAAACCAGAAAGGTTCAGTGAGGGAGTGTCCAAGGCTTGCAAGTTTCCAAGTTCTTATGCGCCATTTGGGTTGGGTACTCGCTTGTGCTTAGGAAAGAACTTTGCACTGGTTGAATTGAAGGTTGTGCTAGCCCTTATCATCTCCAGGTTTAGCTTCACTCTGTCTCCTAATTATAGGCACTCTCCAAAATATATAATGATTGTGGAACCAGAACATGGTATTGATCTTATCATGCAGAAGATCTGA 1605 0.4336 MEEVFVALKLVSVAVVGILSWVLYGYGRVWYESQRVRKRILKQGIKGPPPSFLHGNLPDILKIQAQAASQAKASASTSNHSDQLVAHDYTATLFPYFEHWRKEYGLLYTYSTGLKQHLYVNQPDLIKELNHCITLVLGKPGYLTNKLAPMLGNGVLRANGNSWAQQRKLVAAEFFMDKVKGMVDSMIESTQPLLLKWEQIIESQGGATAEIKVDKDLIGLSADVISRVSFGHSYYSKGKEVFSKLRRIQKALTKDTGFLFGISFREKLNFWSNKKNEIANLEKEIESLIWELVEERKKECSEASSSSQKDLMQLLLEAATSDQSLGKDFSKSFIVDNCKNIYFAGHETTYVAASWCLMLLGLHTDWQTRIRAEVAEHCPNGIPNADSLPQLKTLGMVIQETLRLYPPASFVSREAYEDIQIGHLNVPKGAYLWTLIPTLHRDPEVWGPDANEFKPERFSEGVSKACKFPSSYAPFGLGTRLCLGKNFALVELKVVLALIISRFSFTLSPNYRHSPKYIMIVEPEHGIDLIMQKI 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium436g00016 534 PRINTS P450 superfamily signature 396 407 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium436g00016 534 PRINTS P450 superfamily signature 344 361 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium436g00016 534 PRINTS P450 superfamily signature 473 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium436g00016 534 PRINTS P450 superfamily signature 482 493 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium436g00016 534 Coils Coil 271 298 - -
Vium436g00016 534 Pfam Cytochrome P450 91 529 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium436g00016 534 SUPERFAMILY Cytochrome P450 89 530 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium436g00016 534 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 475 484 IPR017972 GO:0005506|GO:0016705
Vium436g00016 534 Gene3D Cytochrome P450 29 534 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium436g00016 534 PANTHER CYTOCHROME P450 FAMILY MEMBER 27 526 - -
Vium436g00016 534 PRINTS E-class P450 group I signature 101 120 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium436g00016 534 PRINTS E-class P450 group I signature 333 350 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium436g00016 534 PRINTS E-class P450 group I signature 220 238 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium436g00016 534 PRINTS E-class P450 group I signature 472 482 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium436g00016 534 PRINTS E-class P450 group I signature 482 505 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium436g00016 534 PRINTS E-class P450 group I signature 353 379 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium436g00016 Vium-Chr436 57151 62301 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium436g00016 125 527 Cytochrome P450 AT5G24900 54.167 6.43e-161 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium436g00016 K20661 - gmx:100815776 861.677