Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium436g00005 ATGGAGGCACTATTGTGCAGAAAACTGGGTGATCCAACGGTGAGTTTGGAAGACAACGATAGCTCAATAGTTTTGTCAAAGAATCACCCAATTCCCCAACTCGATTCTCCCACCGCTGTAAGAGTCAGAATAAAAGCCACAAGCTTGAACTTCGCCAATTACCTGCAGATTTTGGGTAAGTATCAAGAGAAACCCTCTTTGCCCTTCATCCCAGGCTCCGATTTTTCCGGTTACGTCGACGCCGTTGGCCCCAAAGTTTCGAACTTCCGAGTCGGGGACCCCGTTTGTTCCTTCGCCGGACTCGGCTCATTCGCTCAGTTCATCGTCGTGGACGAGTCCCAGTTGTTTCGGGTGCCCCAAGGTTGCGATCTTGTTGCTGCTGGAGCACTTGCTGTGGCTTTTGGCACTTCTCATGTAGCACTCGTCCACAGGGCCCAATTGGCCTCTGGTCAAGTGTTGTTGGTTTTGGGTGCAGCTGGAGGTGTGGGCCTTGCTGCTGTGCAAATTGGAAAAGCTTGTGGGGCCATTGTCATTGCTGTGGCTAGGGGAGCTGAAAAGGTGCAACTTTTGAAATCTCTTGGTGTTGATCATGTGGTGGACTTGGGTAGTGAAAATGTAACAGAGAGTGTGAAGAAGTTCCTTCAGACTAGAAGGCTTAAGGGGGTTGATGTCCTGTATGACCCGGTTGGAGGTAAACTCACTAAAGAATCTTTGCGGCTTCTAAAATGGGGAGCTAACATTCTCATAATTGGGTTTGCAAGTGGTGAAGTTCCTGTCATCCCTGTTAACGTAGCTCTTGTTAAGAATTGGACGGTGCATGGCCTTTACTGGGGTAGCTATAAGATACACCGCCCAGGTGTTCTTGAAGATTCTGTGAAGGAGCTACTCTCTTGGTTGGCAAGAGGCCTGATTTCCATCCATATTTCTCACTCATATCCCCCGTCAGAGGCCAACTTTGCCTTTTCTGCCATGAAAGATAGGAAAGTTATTGGGAAGGTGATGATTGTTTTCGATGAGAAACATACAAGATCTAAGCTGTGA 1041 0.4813 MEALLCRKLGDPTVSLEDNDSSIVLSKNHPIPQLDSPTAVRVRIKATSLNFANYLQILGKYQEKPSLPFIPGSDFSGYVDAVGPKVSNFRVGDPVCSFAGLGSFAQFIVVDESQLFRVPQGCDLVAAGALAVAFGTSHVALVHRAQLASGQVLLVLGAAGGVGLAAVQIGKACGAIVIAVARGAEKVQLLKSLGVDHVVDLGSENVTESVKKFLQTRRLKGVDVLYDPVGGKLTKESLRLLKWGANILIIGFASGEVPVIPVNVALVKNWTVHGLYWGSYKIHRPGVLEDSVKELLSWLARGLISIHISHSYPPSEANFAFSAMKDRKVIGKVMIVFDEKHTRSKL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium436g00005 346 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1 336 - -
Vium436g00005 346 Pfam Zinc-binding dehydrogenase 161 300 IPR013149 -
Vium436g00005 346 Gene3D - 133 280 - -
Vium436g00005 346 Pfam Alcohol dehydrogenase GroES-like domain 38 97 IPR013154 -
Vium436g00005 346 SUPERFAMILY GroES-like 28 148 IPR011032 -
Vium436g00005 346 Gene3D - 35 331 - -
Vium436g00005 346 CDD QOR1 1 335 - -
Vium436g00005 346 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 150 171 IPR002364 GO:0008270|GO:0016491
Vium436g00005 346 SMART PKS_ER_names_mod 18 335 IPR020843 GO:0016491
Vium436g00005 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 122 285 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium436g00005 Vium-Chr436 39354 48675 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium436g00005 68 266 Monolignol Biosynthesis Gene Families AT1G72680 26.383 2.70e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium436g00005 K00344 - gmx:100817700 590.497