Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4369g00002 ATGGCCGACGTTCACGAAGCTGGTGTTGTTGCAGATCCCTCCCAGATCGATGTCAAGCTTTTCAACCGCTGGAGCTTCGATGATGTTCAGGTTAATGACATTTCTCTGGCCGATTACATTGGAGTGGTGGCATCCAAGCATGCCACCTATGTTCCTCACACTGCTGGTAGGTACTCTGTGAAGCGGTTCAGGAAGGCCCAGTGCCCCATTGTTGAGAGGCTCACCAACTCTCTCATGATGCACGGCAGAAACAATGGCAAGAAACTCATGGCTGTTAGGATCATCAAGCATGCTATGGAAATTATTCATTTGTTGACTGACCTGAACCCCATTCAGGTTATTGTTGATGCTGTCATTAACAGTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTTGTAAGGAGACAGGCTGTGGATATCTCACCCCTTCGCCGAGTTAATCAGGCTATCTATCTTTTAACAACTGGTGCACGGGAAGCTGCATTCAGAAATATCAAAACTTTGCAGAATGTTTTGGCTGATGAACTTATTAATGCACCCAAAGGGTCATCCAACAGTTACGCTATCAAGAAAAAAGATGAAATTGAGAGAGTTGCCAAGGCCAATCGTTGA 621 0.4605 MADVHEAGVVADPSQIDVKLFNRWSFDDVQVNDISLADYIGVVASKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTLQNVLADELINAPKGSSNSYAIKKKDEIERVAKANR 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4369g00002 206 SUPERFAMILY Ribosomal protein S7 19 206 IPR036823 -
Vium4369g00002 206 ProSitePatterns Ribosomal protein S7 signature. 72 98 IPR020606 GO:0003723|GO:0003735|GO:0006412
Vium4369g00002 206 PANTHER RIBOSOMAL PROTEIN S7 16 206 IPR000235 GO:0006412
Vium4369g00002 206 CDD uS7_Eukaryote 19 206 IPR005716 GO:0003735|GO:0006412|GO:0015935
Vium4369g00002 206 NCBIfam 30S ribosomal protein S7 18 206 IPR005716 GO:0003735|GO:0006412|GO:0015935
Vium4369g00002 206 Gene3D Ribosomal protein S7 domain 4 206 IPR036823 -
Vium4369g00002 206 FunFam 40S ribosomal protein S5 3 206 - -
Vium4369g00002 206 Pfam Ribosomal protein S7p/S5e 60 206 IPR023798 -
Vium4369g00002 206 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 3 206 IPR000235 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4369g00002 Vium-Chr4369 11837 14279 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4369g00002 17 206 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 90.526 7.69e-130 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4369g00002 K02989 - gmx:100815850 364.385