Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4368g00007 ATGAACATGTTAGGCCTCAGAGACTTGGTCCTCATAGCTCCAACCCCTTCTCAACTTCACCACCATCAACACCAACACCAACACCAACACCAGCACCAGCACCAACACCACCCCATTTCAGCAGAACACCATCCCAACCTTGCCTTGCCTTCTCCAGCTTCTCTCAGTGTTGGCCTTGGCATTTTCCCTCTGCTAACCGTTCCACACACCAATGATGTTCATGATCAGGTTCAGGACTGTGCCAACAACACCACCACCACCAACCACAACACCAACTACTGGAACCTCAAGATGTGTGGTGTCTCAGAAGTGAATTCCACCAGAAAAGGTGTCATGAACGTGGAAGATGAGGCGAGCAACAAGCATGTGATGGAGAGTGAGGAAAGTGGTGAGTTTAGGGTGTGCCAGGATTGTGGCAATAGGGCCAAGAGGGATTGCAGCTACAAGAGGTGCAGGACTTGTTGCAAAGGACGTGGCTTTGATTGCAGCACTCACGTGAAGAGCACGTGGGTCCCAGCCTCTCTCAGACGCAGTGGTGGTAACAGTGGTAGTGATGGTAACGGTGATGGAGATGCTGATGCTGGTGCTTCTAAGAGGCTAAGAACAATAGGGTCATCCAAGAATGTTGCAGCTACTTCTCTTAGTTCAACTTCCAATGCTACCCCATCAAAGAGCTTTAGCATAGACACTAGCTCATGTCAACAAGATGCTGGTTTCAAGCAATCTTTGCCACGGCATGTGCGTGCACCTGCTGTGTTTAGGTGCCACAGAGTGTCTGCTATTGGGAGTGGTGAAGATGAGATTGCATACTTGGCCACAGTGCATATCAGTGGCCATGTGTTCAAGGGGTTTCTGTATGATCATGGTGCTGATGCCAGAAATGATGTACCTAGTGTCTCTGAACTGCAACTGGGAAACAATGGAAGTGGAAAGAGTAATAATAGGGAATGTTCTTCTGCAATTGGGGTTCCAACCAGTGCTTACCCTGCTTCTGTTTGCTGA 1002 0.49 MNMLGLRDLVLIAPTPSQLHHHQHQHQHQHQHQHQHHPISAEHHPNLALPSPASLSVGLGIFPLLTVPHTNDVHDQVQDCANNTTTTNHNTNYWNLKMCGVSEVNSTRKGVMNVEDEASNKHVMESEESGEFRVCQDCGNRAKRDCSYKRCRTCCKGRGFDCSTHVKSTWVPASLRRSGGNSGSDGNGDGDADAGASKRLRTIGSSKNVAATSLSSTSNATPSKSFSIDTSSCQQDAGFKQSLPRHVRAPAVFRCHRVSAIGSGEDEIAYLATVHISGHVFKGFLYDHGADARNDVPSVSELQLGNNGSGKSNNRECSSAIGVPTSAYPASVC 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4368g00007 333 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 22 319 IPR007818 GO:0003700|GO:0006355
Vium4368g00007 333 MobiDBLite consensus disorder prediction 17 50 - -
Vium4368g00007 333 Pfam Domain of unknown function (DUF702) 134 291 - -
Vium4368g00007 333 NCBIfam LRP1 C-terminal domain 243 289 IPR006511 -
Vium4368g00007 333 NCBIfam putative zinc finger domain, LRP1 type 134 175 IPR006510 -
Vium4368g00007 333 MobiDBLite consensus disorder prediction 173 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4368g00007 Vium-Chr4368 99796 104426 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4368g00007 1 320 C2H2 Transcription Factor Family AT5G12330 38.806 5.98e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vium4368g00007 DUF702 3.2e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4368g00007 - - gmx:100790311 533.487