Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4363g00003 ATGAAGAAGATCACTCCTTCTCCATTTCTCTTCTTTTCATTCCTTCTGCTATGCTTCACATCCCTTGCTTTTGGACAAAATATCACTCACCCAGACGAAGTGAAAGCTCTGAAAGATATAGGCAACATCCTTGGTAATAAGAACTGGGACACAAATATAGATCCATGCAGTAATAAACCTCCCTGGAATGTAACTATTGACAAAGACAAAGCCAACTATGTCAGATGCAACTGTTCTATCTCCATTGACGGCTTTTGTCATGTTGTTTCAATAATGCTGAAAACACAAAATCTTTCAGGCACTCTCCCACCTGAATTGACAGGGCTACCTCACCTTGAAGAAATTGACCTCACTCGCAATTATCTTAATGGAACAATACCTGTTGCATGGGGCTCCTCCAAACTTCGCATTATTTCTCTTCTTGGAAATCGACTTACTGGTCCCATCCCAAAAGAGATTGGAAACATCACAACCCTCGAAAGTTTGGTCCTTGAATTCAATCAATTCACTGGAAATATTACATCGGATCTTGGAAACCTTTCTAACCTCCAAAGATTGCATCTTACTTCTAACAACTTCACTGGAGAACTTCCTGAAACTTTGGCTAAGCTTACATCATTGAGAGAGCTCCGTCTTAATGACAATAACTTCTCTGGAAGGATACCCAGTTTTATTCAAAGATGGACAAATCTTGAAATATTAGAAATTCAAGGTAGTGGTTTAAGTGGGCCAATTCCTTCTGAAATTTCATTTCTGCACAACTTAGATGATTTGAGAATTACTGACTTGACTAATGGATCGGATTCCACTTTCCCACAAATTAATAATATGACAAAGTTGGAAACACTGATACTAAGGAACTGCCAAATTAGCGACGAATTACCTCCGTATCTTGGGAGCATGACAAGCATTAACATGAAAACCTTAGACCTAAGCTTTAACAAATTACGCGGAGAGATTCCAGAGACATTTGAAAAGCTATTATCAATACCCACACGCGTATATCTCACTGGAAATCTACTTAATGGAACACTACCTTCGTGGGTAGCTAATGGAGTTAAATCTGGGAAATCAATAGATCTTTCATACAACAAATTCACCGATAAAAACTCCGAAGCATGCCAAGAGACTGAAGGCGAAATGAACTTGTTTGAAAGCTTCCCAATGAGCCAAAGGGGAGCTGTTACTTGTCTGACTAGTGGAAACTGTACGACAACCTTTGATTATTTCCATATAAATTGTGGTGGTGAACAAGTGAAAAGTAGTGAAGGTATACTATACGATGAAAACTCGGATCCATCGGGAGCAGCAACATCTAAAATGCCCAAAGAAAACTGGGCATTTAGCAATACCGGTCATTTCTTGGATGCTAATACTAATGCAAAAGTCTATATCCAAAAAAGTCAAAATACGCTTTCTATGACAGACTCTGCATTGTATCGGACTGCACGTGTATCTCCCATTTCCTTGACTTATTACGGAACGTGTCTGAAAAATGGAGAGTACACAGTATCACTGCATTTTGCAGAGATCGTGTTCACTGATGATAACACATATAGCAGTCTTGGAAGACGTATATTTGATGTTTACATTCAGGAAAAGCTAGAATTGAAGGATTTCAATATTGCAAATGAAGCAGGAGGAGTTGGAAAGAACATCACAAAAAGAATTTCAACTACTGTTAGTAATGGAACTTTAAACATTCGGTTTTATTGGGCTGGAAAAGGAACAACTGCTATCCCATATAAATCAGTATATGGGCCTCTTATATCAGCTATATCTGCCACTCGTGTAAACAGTTCCAGCAAAGGTCCACGTGACATGGCTATGGGGGTTGTAATTGGGATAGCAGTTTCTGCAATAATATTTGTCATACTTGTTGTACTTGCCTGGAGACTTCATATTGGCAAAAGAAATTCATTAACAAAAGAGTTAAAGCATTTAAATTTGCAAGTGGGTTTGTTTACTATGCGTCAAATAAAAGTTGCAACGAATAACTTTGATATTGCTAATAAGATTGGAGAAGGAGGCTTTGGTCCTGTCTACAAGGGTACTTTATCGGATGGCACAACAATAGCAGTTAAGATGCTTTCATCAAAGTCTAAGCAAGGGAACCGTGAGTTTATAAATGAGATAGGGTTGATTTCTGCTTTGCAACACCCTTGTCTTGTCAAACTTTACGGTTGTTGTGTTGAGGGAAATCAGTTGTTGCTGGTTTACGAATATCTGGAAAACAATAGTCTTGCACATGCTTTATTTAGAAATGAAGAATCTTGTTTGCGATTGGATTGGCCAACCAGGCACAAGATTTGTGTTGGTATAGCTAGAGGTTTGGCTTTCCTACATGAAGAATCAAGATTAAAAGTTGTTCACAGAGACATAAAGGCTACTAATGTGTTGTTAGACAAAGATCTTAATCCTAAGATATCTGATTTTGGTCTTGCAAAGCTTGATGATGAAGACAACACTCACATAAGCACAAGAATAGCTGGGACTTATGGATATATGGCTCCAGAATATGCAATGCATGGTTATTTAACTGATAAAGCAGATGTGTATAGTTTTGGAGTGGTTGCCTTGGAAATTGTTACTGGAAAGAGTAATACCATCCCGAGACCCAAGCAAGAAGCATTGCATCTTTTAGATTGGGCACATATATTGAAAGAGAAAGGGAATCTGATGGAGCTTATTGATAGAAGATTAGGAACAAATTTCAATGAAAAAGAGGTTATGATGATGATAAAAGTGGGTCTTCTGTGCACAAATGCCACTGCAAACCTTAGACCTACCATGTCATCAGTTCTTAGCATGCTTGAAGGAAAAACTGTGATTCCAGAATTTGTTTCAGATTCATCTGAAGTAATGGATGAAAAGAAGCAAGAGGCTATGAGACAATATTACTCTCAAATGGAAGAAAATGAGATCAATGAAACACATAGATATGATAGTTCATCAAAAGATGGGCCATGGACTGCTTCTTCTTCATCAGCTGCAGATTTATATCCTGTCCATACTGATTCTTCTTATTGGGAGAAAAGAAATTAG 3045 0.38 MKKITPSPFLFFSFLLLCFTSLAFGQNITHPDEVKALKDIGNILGNKNWDTNIDPCSNKPPWNVTIDKDKANYVRCNCSISIDGFCHVVSIMLKTQNLSGTLPPELTGLPHLEEIDLTRNYLNGTIPVAWGSSKLRIISLLGNRLTGPIPKEIGNITTLESLVLEFNQFTGNITSDLGNLSNLQRLHLTSNNFTGELPETLAKLTSLRELRLNDNNFSGRIPSFIQRWTNLEILEIQGSGLSGPIPSEISFLHNLDDLRITDLTNGSDSTFPQINNMTKLETLILRNCQISDELPPYLGSMTSINMKTLDLSFNKLRGEIPETFEKLLSIPTRVYLTGNLLNGTLPSWVANGVKSGKSIDLSYNKFTDKNSEACQETEGEMNLFESFPMSQRGAVTCLTSGNCTTTFDYFHINCGGEQVKSSEGILYDENSDPSGAATSKMPKENWAFSNTGHFLDANTNAKVYIQKSQNTLSMTDSALYRTARVSPISLTYYGTCLKNGEYTVSLHFAEIVFTDDNTYSSLGRRIFDVYIQEKLELKDFNIANEAGGVGKNITKRISTTVSNGTLNIRFYWAGKGTTAIPYKSVYGPLISAISATRVNSSSKGPRDMAMGVVIGIAVSAIIFVILVVLAWRLHIGKRNSLTKELKHLNLQVGLFTMRQIKVATNNFDIANKIGEGGFGPVYKGTLSDGTTIAVKMLSSKSKQGNREFINEIGLISALQHPCLVKLYGCCVEGNQLLLVYEYLENNSLAHALFRNEESCLRLDWPTRHKICVGIARGLAFLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLDDEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGVVALEIVTGKSNTIPRPKQEALHLLDWAHILKEKGNLMELIDRRLGTNFNEKEVMMMIKVGLLCTNATANLRPTMSSVLSMLEGKTVIPEFVSDSSEVMDEKKQEAMRQYYSQMEENEINETHRYDSSSKDGPWTASSSSAADLYPVHTDSSYWEKRN 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4363g00003 1014 ProSiteProfiles Protein kinase domain profile. 667 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4363g00003 1014 CDD STKc_IRAK 673 940 - -
Vium4363g00003 1014 Pfam Protein tyrosine and serine/threonine kinase 669 937 IPR001245 GO:0004672|GO:0006468
Vium4363g00003 1014 SMART serkin_6 667 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4363g00003 1014 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 408 598 - -
Vium4363g00003 1014 Pfam Leucine Rich repeat 303 319 IPR001611 GO:0005515
Vium4363g00003 1014 MobiDBLite consensus disorder prediction 969 997 - -
Vium4363g00003 1014 SMART LRR_typ_2 180 203 IPR003591 -
Vium4363g00003 1014 SMART LRR_typ_2 109 133 IPR003591 -
Vium4363g00003 1014 SMART LRR_typ_2 204 228 IPR003591 -
Vium4363g00003 1014 SMART LRR_typ_2 277 301 IPR003591 -
Vium4363g00003 1014 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 636 742 - -
Vium4363g00003 1014 SUPERFAMILY RNI-like 93 368 - -
Vium4363g00003 1014 Gene3D Ribonuclease Inhibitor 265 386 IPR032675 -
Vium4363g00003 1014 Gene3D Ribonuclease Inhibitor 190 264 IPR032675 -
Vium4363g00003 1014 Gene3D Transferase(Phosphotransferase) domain 1 743 953 - -
Vium4363g00003 1014 Pfam Leucine Rich Repeat 182 204 IPR001611 GO:0005515
Vium4363g00003 1014 Gene3D Ribonuclease Inhibitor 31 189 IPR032675 -
Vium4363g00003 1014 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 30 264 - -
Vium4363g00003 1014 Gene3D - 409 598 - -
Vium4363g00003 1014 SUPERFAMILY Protein kinase-like (PK-like) 651 947 IPR011009 -
Vium4363g00003 1014 Gene3D Phosphorylase Kinase; domain 1 631 742 - -
Vium4363g00003 1014 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 12 970 - -
Vium4363g00003 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
Vium4363g00003 1014 FunFam Putative LRR receptor-like serine/threonine-protein kinase 743 950 - -
Vium4363g00003 1014 Pfam Malectin domain 410 593 IPR021720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4363g00003 Vium-Chr4363 32104 45417 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4363g00003 24 970 Receptor kinase-like Gene Family AT1G53420 53.326 0.0 969
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium4363g00003 PK_Tyr_Ser-Thr 9.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4363g00003 - - gmx:100785451 1411.36