Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4363g00002 ATGATTTGCATTTCTTATGACAGTGCTCTGTTGGGAAATCGACTAAGTGGTCCATTTCCTGAAGTGCTCACACAAATCACCACTCTTAAGACTTTGATTCTGGAGTCCAATAATTTCTATGGAAATCTTCCTCCAGAACTTGGCGATCTTCCACAGTTAGAAAGATTGCTACTTAACTCTAATAATTTCACAGGGGAGTGGCCTCAAACACTTTCCAATCTGAGTACATTGAGAGATGTACGTCTGGGCGATAATCAATTTTCTGGAAAGATACCTAAATTTATTGAAAAATGGACAAATCTCCAAATATTAGATATTACAGGGAGTGGCTTGGCAGGACCATTTCCATCTGGATTTTCATTTCCGCAAAGCTTAATCAAATTGAAAGTTACTGACTTAAATGGACCCGAGTCAACTTTTCCATCAGTTAACTTGATACGATTGGAACGATTGGTATTAAGGAATTGCAATATTAACGACAAAATACCAGAATATATTGGAAACATGACAAATTTGAGACTTTTGGATCTCAGCTATAACAGATTAAGGGGCAAAATTCCAAACATGGAAGGACTAATAAACGCAACTAATATATATTTTACTGGAAACCTTCTCACTGGATCAAGAAATGAATGGAGATTACCTAAGAAGGCTAAGTTCATAGATCTTTCATACAATAATTTCAGCAACGGTAATGAAGGAGCACCAGGATGTCTGGATCAAAATAAGAATGTTTTTGCAAGCTTTTCAAGTGAGAATAACTCAGGACCCTATTCTTGTATAAAGGCGACATGTGCTAAGACCTCTTACTCCTTCCATATAAATTGTGGTGGAAATGATGTGATAAGAATTGGAGATACAATATATGATCGTGATTTAAGCGTTCAATCGGAAGAAGTAGCAATATCTTATTCGTCATATTGGGCGATTAGCAATACTGGTCTCCTATTAGACGCTAACAGTGAAAAAGAAGCACGCAGCTACGAAGTACAAAATATATCAAGGCTTTATATGTCTGATGCTGAAGCCAAACTCTATAGCACTGCAAGAATGTCTCCCCTTTCTTTAACTTATTATGGATTTTGCCTCGCAAATGGAAATTACACAGTAAGACTTCACTTTGCTGAGATAATGTTCACAGATGATAACACATACAGAAGCCTAGGTCGACGTCTATTTGATGTTTACATTCAGGGAAAACGAGTATTGAAGGATTTCAATATAGTAAAGAAAGCACAAGGGGCTGGAAAGGCACATATAGAAAATTTTACTGCTTCAGTGAGTAACTCAACCTTAGAGATTCGTTTCTATTGGGCAGGAAAAGGGTCAACTGGTATTCCAAAAAGATCAGTATATGGCCCTCTTATTTCAGCAATATCTGTCACTTCTGATGATTTTAAACCTCCATCACCACCTGGTCATCATCATAAACGGGTCGTGCTTCTCATTATGGTTGCAACATTGGTTATTCTCATCTTGGTTTTCGGCATACTTTGGTGGAGATTTTGCCTTAAAAGTAATAACTCATTATCTAAAGAATTCAAGGATTTAGATTTGAAAACTGGTGTATTTACCTTACGTCAAATCAAAGTAGCAACAAATAACTTCAATATTTCAAACAAGATAGGAGAAGGAGGATTTGGTCCTGTGTATAAGGGCATTTTGTGGGATGGCACAATGATAGCAGTGAAACAACTTTCGTCTAAATCAAAACAAGGAAACCGAGAGTTCATAAATGAGATAGGCTTGATCTCAGCTTTGCAACATCCTTATCTGGTTAAACTTTATGGTTGTTGTGTCGAGGGAGATCAACTATTGCTGGTATATGAATATTTGGAAAACAATAGTTTAGCACATGCTCTATTTGGTAGCGAAGAAGTTAGTTTACAATTAAATTGGGCAATAAGGCAGAAGATTTGCATAGGTATCGCTAAAGGTTTGGCTTTCCTACATGAAGAATCAAGAATCAAAATTGTTCACAGGGACATCAAGGCCACTAATGTGTTGCTTGATAAAGAGCTAAATCCAAAAATATCTGATTTTGGTTTAGCTAAACTTGATGATGAGGAAGACAACACTCATATAAGCACTCGAATAGCTGGGACCTATGGATATATGGCTCCTGAATATGCCATGCATGGATATTTGACAGAGAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATTGTTAGTGGAAAGAGTAACACAATCCACCGACCAAAGGAGGGAACGATCTGTCTTCTTGATTCGGCACGTGTGTTGAAAGCAGAAGGTAAATTAATGGAGTTGGTTGATGAAAGACTAGGGTCAACTTTCAATGAAGAAGAAGTCATGGTGATGATTAATGTGGCTCTTCTGTGCACCAATGCTACTTCCAATCTTAGACCCACCATGTCTTCAGTTGTAAGCATGCTTGAAGGCAAAAGTCTTGTTTCAGAATTCGTTTCAAATACAAGTGAAGTTATGGATGAAATGAAGTTAGAAACAATGAGACAGTACTATAATCAAAGTCAAACTTTATCAATTGAATGGCCTTCATCTTCATCTTCGGTTGATCATTATCCCCTTTACCCTAATTCATCATTGGAGACCAACAGATTAAAAGATTCTATGTAA 2625 0.3695 MICISYDSALLGNRLSGPFPEVLTQITTLKTLILESNNFYGNLPPELGDLPQLERLLLNSNNFTGEWPQTLSNLSTLRDVRLGDNQFSGKIPKFIEKWTNLQILDITGSGLAGPFPSGFSFPQSLIKLKVTDLNGPESTFPSVNLIRLERLVLRNCNINDKIPEYIGNMTNLRLLDLSYNRLRGKIPNMEGLINATNIYFTGNLLTGSRNEWRLPKKAKFIDLSYNNFSNGNEGAPGCLDQNKNVFASFSSENNSGPYSCIKATCAKTSYSFHINCGGNDVIRIGDTIYDRDLSVQSEEVAISYSSYWAISNTGLLLDANSEKEARSYEVQNISRLYMSDAEAKLYSTARMSPLSLTYYGFCLANGNYTVRLHFAEIMFTDDNTYRSLGRRLFDVYIQGKRVLKDFNIVKKAQGAGKAHIENFTASVSNSTLEIRFYWAGKGSTGIPKRSVYGPLISAISVTSDDFKPPSPPGHHHKRVVLLIMVATLVILILVFGILWWRFCLKSNNSLSKEFKDLDLKTGVFTLRQIKVATNNFNISNKIGEGGFGPVYKGILWDGTMIAVKQLSSKSKQGNREFINEIGLISALQHPYLVKLYGCCVEGDQLLLVYEYLENNSLAHALFGSEEVSLQLNWAIRQKICIGIAKGLAFLHEESRIKIVHRDIKATNVLLDKELNPKISDFGLAKLDDEEDNTHISTRIAGTYGYMAPEYAMHGYLTEKADVYSFGIVALEIVSGKSNTIHRPKEGTICLLDSARVLKAEGKLMELVDERLGSTFNEEEVMVMINVALLCTNATSNLRPTMSSVVSMLEGKSLVSEFVSNTSEVMDEMKLETMRQYYNQSQTLSIEWPSSSSSVDHYPLYPNSSLETNRLKDSM 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4363g00002 874 ProSitePatterns Serine/Threonine protein kinases active-site signature. 658 670 IPR008271 GO:0004672|GO:0006468
Vium4363g00002 874 Gene3D - 269 465 - -
Vium4363g00002 874 Gene3D Phosphorylase Kinase; domain 1 501 611 - -
Vium4363g00002 874 SUPERFAMILY L domain-like 10 210 - -
Vium4363g00002 874 FunFam Putative LRR receptor-like serine/threonine-protein kinase 612 820 - -
Vium4363g00002 874 ProSiteProfiles Protein kinase domain profile. 536 818 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4363g00002 874 Pfam Malectin domain 271 459 IPR021720 -
Vium4363g00002 874 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 10 848 - -
Vium4363g00002 874 Gene3D Transferase(Phosphotransferase) domain 1 612 830 - -
Vium4363g00002 874 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 505 611 - -
Vium4363g00002 874 Pfam Leucine Rich Repeat 171 188 IPR001611 GO:0005515
Vium4363g00002 874 Pfam Protein tyrosine and serine/threonine kinase 537 808 IPR001245 GO:0004672|GO:0006468
Vium4363g00002 874 SMART serkin_6 536 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4363g00002 874 CDD STKc_IRAK 542 810 - -
Vium4363g00002 874 FunFam Leucine-rich repeat receptor protein kinase EMS1 19 118 - -
Vium4363g00002 874 ProSiteProfiles Leucine-rich repeat profile. 171 193 IPR001611 GO:0005515
Vium4363g00002 874 Gene3D Ribonuclease Inhibitor 5 131 IPR032675 -
Vium4363g00002 874 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 269 464 - -
Vium4363g00002 874 SUPERFAMILY Protein kinase-like (PK-like) 522 810 IPR011009 -
Vium4363g00002 874 Gene3D Ribonuclease Inhibitor 132 268 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4363g00002 Vium-Chr4363 23060 31329 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4363g00002 10 856 Receptor kinase-like Gene Family AT1G53420 54.114 0.0 869
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium4363g00002 PK_Tyr_Ser-Thr 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4363g00002 - - vvi:100255520 1004.59