Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4362g00017 ATGCCTTCATTTGCAACAGACAAGAAGCTCAACTTCTCAAGGAATTGGTTTCTCATGGCTCTTGCCCTCATATTTTGCTCAAAGGACCCTCAGCTGTCTCATGATTTAAGACACTTCCCTATTCAGGACCAAAGCCTTAAGAAAGTCTCTGTACCCATAACATCCAGTCCTCATCACATGGAGCTAGATGTAAATTCAGAACCAAATGACAAATATGCTTTAATGGGATTAATCAAAGAAATAAGCAATATATATGCTATTGCCCCTGAAGTAAGCAATATTAATTTCAAGTCAGATTTTAAAGTAATAGTTCTTTATGATGTCCACAAAGCTGTAGATAACATTCAGCACATTATCAAATGGGTAGACCGCTATTCTGATATATGCAAATTAGTACTCTGCTGTGAAGATGATGCAGACATGATTGAAGCTGTGAAAAATCGGTTCAAAACTGTACTAGTTGATGCTCCTCAAGCTCACCAAGTTGTTGAGGTTCTTATGCAGATAGCAAAGAATGAGAAATTTGATCTGTCCATGAACTTTGCTACGAAGATTGCTACAAAATCTAAGCAGAACCTCAGAAAAGCAATCATGGCTCTGGAAGCATGCAAAGCACACAAGAGCTTCCGACTGGAAACATTTACTTTAACATTCCTAGAAAATTGTCTCCATAGACTAAATAGGGTACTATGA 693 0.3766 MPSFATDKKLNFSRNWFLMALALIFCSKDPQLSHDLRHFPIQDQSLKKVSVPITSSPHHMELDVNSEPNDKYALMGLIKEISNIYAIAPEVSNINFKSDFKVIVLYDVHKAVDNIQHIIKWVDRYSDICKLVLCCEDDADMIEAVKNRFKTVLVDAPQAHQVVEVLMQIAKNEKFDLSMNFATKIATKSKQNLRKAIMALEACKAHKSFRLETFTLTFLENCLHRLNRVL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4362g00017 230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 206 IPR027417 -
Vium4362g00017 230 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 51 206 - -
Vium4362g00017 230 Gene3D - 16 157 IPR027417 -
Vium4362g00017 230 FunFam replication factor C subunit 3 158 211 - -
Vium4362g00017 230 Gene3D - 159 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4362g00017 Vium-Chr4362 69327 71018 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4362g00017 55 206 Core DNA Replication Machinery Family AT5G27740 35.065 3.63e-24 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4362g00017 K10756 - vum:124837802 462.611