Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4362g00015 ATGGCTCTTGCCCTCATATTTTGCTCAAAGGACCCTCAGCTGTCTCATGATTTAAGACACTTCCCTATTCAGGACCAAAGCCTTAAGAAAGTCTCTGTACCCATAACATCCAGTCCTCATCACATGGAGCTAGATGTAAATTCAGAACCAAATGACAAATATGCTTTAATGGGATTAATCAAAGAAATAAGCAATATATATGCTATTGCCCCTGAAGTAAGCAATATTAATTTCAAGTCAGATTTTAAAGTAATAGTTCTTTATGATGTCCACAAAGCTGTAGATAACATTCAGCACATTATCAAATGGGTAGACCGCTATTCTGATATATGCAAATTAGTACTCTGCTGTGAAGATGATGCAGACATGATTGAAGCTGTGAAAAATCGGTTCAAAACTGTACTAGTTGATGCTCCTCAAGCTCACCAAGTTGTTGAGGTTCTTATGCAGATAGCAAAGAATGAGAAATTTGATCTGTCCATGAACTTTGCTACGAAGATTGCTACAAAATCTAAGCAGAACCTCAGAAAAGCAATCATGGCTCTGGAAGCATGCAAAGCACACAAGAGCTTCCGACTGGAAACATTTACTTTAACATTCCTAGAAAATTGTCTCCATAGACTAAATAGGGTACTATGA 639 0.374 MALALIFCSKDPQLSHDLRHFPIQDQSLKKVSVPITSSPHHMELDVNSEPNDKYALMGLIKEISNIYAIAPEVSNINFKSDFKVIVLYDVHKAVDNIQHIIKWVDRYSDICKLVLCCEDDADMIEAVKNRFKTVLVDAPQAHQVVEVLMQIAKNEKFDLSMNFATKIATKSKQNLRKAIMALEACKAHKSFRLETFTLTFLENCLHRLNRVL 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4362g00015 212 FunFam replication factor C subunit 3 140 193 - -
Vium4362g00015 212 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 33 188 - -
Vium4362g00015 212 Gene3D - 141 199 - -
Vium4362g00015 212 Gene3D - 1 139 IPR027417 -
Vium4362g00015 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 188 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4362g00015 Vium-Chr4362 65140 66401 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4362g00015 37 188 Core DNA Replication Machinery Family AT5G27740 35.065 3.18e-24 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4362g00015 K10756 - vum:124837802 424.476