Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4362g00013 ATGGGTCTCTGCTTTTCTTCCGGCGCTCCTAGCCAAACACCCTCTAATTCTCTTCACTATTCTGGTTCAGGGCGTGAAGGCGAAAGTGTTAATGGAGGAAGCAGTAGCGTTAGCAGTATCAGTGGGAACAACGTTGTGTTTCCGAGTGTGGAAAAAAGGAACTTGAAGCAGTTCAATTTTGCAGAGCTGAAAGCTGCAACCAAGGGTTTCAGATCTGATACACTGCTTGGAGAAGGGGGTTTTGGGAAAGTTTACAAAGGGTGGTTGCATGAGGAGACACTGACACCAGCCAAAGCTGGATCTGGAATGGTGGTTGCTGTTAAGAAATTGAACTCAGAGAGCGTGCAGGGATTTCGAGAGTGGCAGTCTGAAATCAATTTTTTAGGAAGAGTTTCTCACCAAAACCTGGTGAAGCTTTTGGGTTACTGTTGTGACGATGTGGAATTTCTACTTGTGTACGAGTTCATGCCAAAGGGAAGCTTGGAGAATCATCTCTTTAGAAGAAATACGAACACAGAACCACTGTCTTGGGACACCAGACTCAAAATAGCTATTGGTGCAGCTAGAGGCTTGGCTTTCTTACACACCTCAGAAAAGCAAATCATATACAGAGATTTCAAAGCCTCAAATATACTACTTGATGAGGATTACAATGCAAAAATTTCAGATTTTGGTTTGGCCAAATTAGGCCCTTCTGGGGGAGTTTCACACGTGACTACCAGGATCATGGGCACATATGGCTATGCTGCTCCAGAATACATTGCAACAGGACACTTGTATGTGAAGAGTGATGTTTATGGTTTTGGTGTAGTGCTGCTTGAAATTCTTACAGGGTTGCGGGCACTTGATAGAAACCGACCCTTGGAGCAGCAGAATCTAATTGAATGGGCTAAGCCTTCTCTGTCTGATAAAAGAAAGTTGAAAAGCATAATGGATGAGAGAATAGAGGGTCAGTATTCAACCAAGGCAGCAATGAAAGCAGCACATTTAACTCTAAAATGCCTTCAACGTGACCATAGAAAACGTCCTCCCATGAAAGATGTTCTGGAAACATTGGAACGCATAGAACTTATAAAGGATAGAAGGAAATAA 1092 0.4313 MGLCFSSGAPSQTPSNSLHYSGSGREGESVNGGSSSVSSISGNNVVFPSVEKRNLKQFNFAELKAATKGFRSDTLLGEGGFGKVYKGWLHEETLTPAKAGSGMVVAVKKLNSESVQGFREWQSEINFLGRVSHQNLVKLLGYCCDDVEFLLVYEFMPKGSLENHLFRRNTNTEPLSWDTRLKIAIGAARGLAFLHTSEKQIIYRDFKASNILLDEDYNAKISDFGLAKLGPSGGVSHVTTRIMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTGLRALDRNRPLEQQNLIEWAKPSLSDKRKLKSIMDERIEGQYSTKAAMKAAHLTLKCLQRDHRKRPPMKDVLETLERIELIKDRRK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4362g00013 363 SUPERFAMILY Protein kinase-like (PK-like) 40 352 IPR011009 -
Vium4362g00013 363 Pfam Protein tyrosine and serine/threonine kinase 74 352 IPR001245 GO:0004672|GO:0006468
Vium4362g00013 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Vium4362g00013 363 FunFam Serine/threonine-protein kinase PBS1 156 363 - -
Vium4362g00013 363 Gene3D Phosphorylase Kinase; domain 1 33 155 - -
Vium4362g00013 363 MobiDBLite consensus disorder prediction 1 39 - -
Vium4362g00013 363 FunFam Serine/threonine-protein kinase BIK1 37 155 - -
Vium4362g00013 363 Gene3D Transferase(Phosphotransferase) domain 1 156 362 - -
Vium4362g00013 363 ProSiteProfiles Protein kinase domain profile. 70 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4362g00013 363 PANTHER OS01G0588500 PROTEIN-RELATED 39 355 - -
Vium4362g00013 363 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Vium4362g00013 363 CDD STKc_IRAK 76 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4362g00013 Vium-Chr4362 59327 62517 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4362g00013 56 352 Glycoside Hydrolase AT3G07070 49.664 4.18e-102 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium4362g00013 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4362g00013 - - gmx:100777578 612.068