Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4362g00012 ATGATAATGCAGTCAGAAATCACGTTTTTGGGAACAGTTTCTCACCCAAACCTGGTGAAGCTTTTGGGTTACTGCTGTGACGACGTGGAGTTTCTCCTTGTGTACGAATTCATGCCAAAGGGAAGCTTGGAGACTCATCTATTTTGGAGAAATACTAACACAGAACCTTTGTCTTGGGACACTCGACTGAAAATAGCTATTGGTGCAGCTCGGGGTTTGGCTTACTTGCACACCTCAGATAAGCAAATCATATACAGAGATTTCAAAGCCTCCAATATATTACTTGATGAGGAGTTCAACGCGAAAATATCAGATTTTGGTTTGGCGAAACTAGGCCCTTCTGCGGGAGATTCACACGTGACAACGAGAATCATAGGAACATATGGTTATGCTGCTCCAGAATACATCGCAACAGGTCACCTATATGTGAAAAGTGATGTTTATGGATTTGGTGTGGTGCTGCTTGAAATGCTGAAAGGGATGAGAGCACTTGATCAAAAGCGACCTTCAGGGCAGCAGAATCTGGTTGAATGGATTAAGCCTTATCTGTCTGATAAAAGTAAGTTGAAAAGTGATATTATGGACGAGAAGATTGAAGGTCAGTATTCAACAAATGCAGCACTCAAAGCAGCACAGCTTACTCTAAAATGCCTTCAAAATGACCCTAAACTACGTCCTTCTATGCAACAAGTTCTACAGACATTGGAAACCATCCAAGCTATCAAACTTAGAACGAGGAAAAGAACCAAACATTTCCCAACTATCAACAATTTCCATTAG 780 0.4128 MIMQSEITFLGTVSHPNLVKLLGYCCDDVEFLLVYEFMPKGSLETHLFWRNTNTEPLSWDTRLKIAIGAARGLAYLHTSDKQIIYRDFKASNILLDEEFNAKISDFGLAKLGPSAGDSHVTTRIIGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMLKGMRALDQKRPSGQQNLVEWIKPYLSDKSKLKSDIMDEKIEGQYSTNAALKAAQLTLKCLQNDPKLRPSMQQVLQTLETIQAIKLRTRKRTKHFPTINNFH 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4362g00012 259 CDD STKc_IRAK 4 238 - -
Vium4362g00012 259 Pfam Protein kinase domain 3 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4362g00012 259 ProSiteProfiles Protein kinase domain profile. 1 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4362g00012 259 SUPERFAMILY Protein kinase-like (PK-like) 3 243 IPR011009 -
Vium4362g00012 259 PANTHER OS01G0588500 PROTEIN-RELATED 4 239 - -
Vium4362g00012 259 PIRSF ILK 2 254 - -
Vium4362g00012 259 ProSitePatterns Serine/Threonine protein kinases active-site signature. 83 95 IPR008271 GO:0004672|GO:0006468
Vium4362g00012 259 Gene3D Transferase(Phosphotransferase) domain 1 39 255 - -
Vium4362g00012 259 Gene3D Phosphorylase Kinase; domain 1 2 38 - -
Vium4362g00012 259 FunFam Serine/threonine-protein kinase PBS1 38 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4362g00012 Vium-Chr4362 52706 54589 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4362g00012 6 235 Glycoside Hydrolase AT3G07070 50.216 1.28e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium4362g00012 Pkinase 3.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4362g00012 - - gmx:100778116 419.853