Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4362g00011 ATGAGGAAGTTGAAGGAGTTTAGTTTCGCAGAGCTGAAAGCAGCTACAAAGGGTTTCAAGTCAGATGCGTTGCTTGGAGAAGGAGGTTTTGGGAAAGTTTACAAAGGATGGTTGCATAAGAAAACTCTGACACCAACCAAAGCTGGTTCTGGAATCATGGTAGCTATCAAAAAGTTGAATCCCGAAAGTATGCAGGGCCTCCAGGAGTGGCAGTCAGAAATCACGTTTTTGGGAACAGTTTCTCACCCAAACCTGGTGAAGCTTTTGGGTTACTGCTGTGACGACGTGGAGTTTCTCCTTGTGTACGAATTCATGCCAAAGGGAAGCTTGGAGACTCATCTATTTTGGACTATTGGTGCAGCTCGGGGTTTGGCTTACTTGCACACCTCAGATAAGCAAATCATATACAGAGATTTCAAAGCCTCCAATATATTACTTGATGAGGAGTTCAACGCGAAAATATCAGATTTTGGTTTGGCGAAACTAGGCCCTTCTGCGGGAGATTCACACGTGACAACGAGAATCATAGGAACATATGGTTATGCTGCTCCAGAATACATCGCAACAGGTCACCTATATGTGAAAAGTGATGTTTATGGATTTGGTGTGGTGCTGCTTGAAATGCTGAAAGGGATGAGAGCACTTGATCAAAAGCGACCTTCAGGGCAGCAGAATCTGGTTGAATGGATTAAGCCTTATCTGTCTGATAAAAGTAAGTTGAAAAGTGATATTATGGACGAGAAGATTGAAGGTCAGTATTCAACAAATGCAGCACTCAAAGCAGCACAGCTTACTCTAAAATGCCTTCAAAATGACCCTAAACTACGTCCTTCTATGCAACAAGTTCTACAGACATTGGAAACCATCCAAGCTATCAAACTTAGAACGAGGAAAAGAACCAAACATTTCCCAACTATCAACAATTTCCATTAG 933 0.4234 MRKLKEFSFAELKAATKGFKSDALLGEGGFGKVYKGWLHKKTLTPTKAGSGIMVAIKKLNPESMQGLQEWQSEITFLGTVSHPNLVKLLGYCCDDVEFLLVYEFMPKGSLETHLFWTIGAARGLAYLHTSDKQIIYRDFKASNILLDEEFNAKISDFGLAKLGPSAGDSHVTTRIIGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMLKGMRALDQKRPSGQQNLVEWIKPYLSDKSKLKSDIMDEKIEGQYSTNAALKAAQLTLKCLQNDPKLRPSMQQVLQTLETIQAIKLRTRKRTKHFPTINNFH 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4362g00011 310 ProSiteProfiles Protein kinase domain profile. 19 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4362g00011 310 PANTHER OS01G0588500 PROTEIN-RELATED 3 290 - -
Vium4362g00011 310 SUPERFAMILY Protein kinase-like (PK-like) 4 293 IPR011009 -
Vium4362g00011 310 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Vium4362g00011 310 Pfam Protein kinase domain 20 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4362g00011 310 FunFam Serine/threonine-protein kinase BIK1 1 104 - -
Vium4362g00011 310 ProSitePatterns Protein kinases ATP-binding region signature. 25 58 IPR017441 GO:0005524
Vium4362g00011 310 Gene3D Transferase(Phosphotransferase) domain 1 105 306 - -
Vium4362g00011 310 Gene3D Phosphorylase Kinase; domain 1 3 104 - -
Vium4362g00011 310 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 109 300 - -
Vium4362g00011 310 CDD STKc_IRAK 25 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4362g00011 Vium-Chr4362 51578 54589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4362g00011 7 286 Glycoside Hydrolase AT3G07070 46.801 2.78e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium4362g00011 Pkinase 5.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4362g00011 - - gmx:100778116 499.204