Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4362g00010 ATGAGGAAGTTGAAGGAGTTTAGTTTCGCAGAGCTGAAAGCAGCTACAAAGGGTTTCAAGTCAGATGCGTTGCTTGGAGAAGGAGGTTTTGGGAAAGTTTACAAAGGATGGTTGCATAAGAAAACTCTGACACCAACCAAAGCTGGTTCTGGAATCATGGTAGCTATCAAAAAGTTGAATCCCGAAAGTATGCAGGGCCTCCAGGAGTGGCAGTCAGAAATCACGTTTTTGGGAACAGTTTCTCACCCAAACCTGGTGAAGCTTTTGGGTTACTGCTGTGACGACGTGGAGTTTCTCCTTGTGTACGAATTCATGCCAAAGGGAAGCTTGGAGACTCATCTATTTTGGAGAAATACTAACACAGAACCTTTGTCTTGGGACACTCGACTGAAAATAGCTATTGGTGCAGCTCGGGGTTTGGCTTACTTGCACACCTCAGATAAGCAAATCATATACAGAGATTTCAAAGCCTCCAATATATTACTTGATGAGGAGTTCAACGCGAAAATATCAGATTTTGGTTTGGCGAAACTAGGCCCTTCTGCGGGAGATTCACACGTGACAACGAGAATCATAGGAACATATGGTTATGCTGCTCCAGAATACATCGCAACAGGTCACCTATATGTGAAAAGTGATGTTTATGGATTTGGTGTGGTGCTGCTTGAAATGCTGAAAGGGATGAGAGCACTTGATCAAAAGCGACCTTCAGGGCAGCAGAATCTGGTTGAATGGATTAAGCCTTATCTGTCTGATAAAAGTAAGTTGAAAAGTGATATTATGGACGAGAAGATTGAAGGTCAGTATTCAACAAATGCAGCACTCAAAGCAGCACAGCTTACTCTAAAATGCCTTCAAAATGACCCTAAACTACGTCCTTCTATGCAACAAGTTCTACAGACATTGGAAACCATCCAAGCTATCAAACTTAGAACGAGGAAAAGAACCAAACATTTCCCAACTATCAACAATTTCCATTAG 981 0.422 MRKLKEFSFAELKAATKGFKSDALLGEGGFGKVYKGWLHKKTLTPTKAGSGIMVAIKKLNPESMQGLQEWQSEITFLGTVSHPNLVKLLGYCCDDVEFLLVYEFMPKGSLETHLFWRNTNTEPLSWDTRLKIAIGAARGLAYLHTSDKQIIYRDFKASNILLDEEFNAKISDFGLAKLGPSAGDSHVTTRIIGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMLKGMRALDQKRPSGQQNLVEWIKPYLSDKSKLKSDIMDEKIEGQYSTNAALKAAQLTLKCLQNDPKLRPSMQQVLQTLETIQAIKLRTRKRTKHFPTINNFH 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4362g00010 326 CDD STKc_IRAK 25 305 - -
Vium4362g00010 326 ProSiteProfiles Protein kinase domain profile. 19 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4362g00010 326 FunFam Serine/threonine-protein kinase PBS1 105 319 - -
Vium4362g00010 326 Gene3D Phosphorylase Kinase; domain 1 3 104 - -
Vium4362g00010 326 Pfam Protein tyrosine and serine/threonine kinase 22 302 IPR001245 GO:0004672|GO:0006468
Vium4362g00010 326 SUPERFAMILY Protein kinase-like (PK-like) 5 314 IPR011009 -
Vium4362g00010 326 PANTHER OS01G0588500 PROTEIN-RELATED 3 306 - -
Vium4362g00010 326 FunFam Serine/threonine-protein kinase BIK1 1 104 - -
Vium4362g00010 326 ProSitePatterns Protein kinases ATP-binding region signature. 25 58 IPR017441 GO:0005524
Vium4362g00010 326 Gene3D Transferase(Phosphotransferase) domain 1 105 322 - -
Vium4362g00010 326 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4362g00010 Vium-Chr4362 51578 54589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4362g00010 7 302 Glycoside Hydrolase AT3G07070 49.158 1.53e-98 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium4362g00010 PK_Tyr_Ser-Thr 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4362g00010 - - gmx:100778116 543.888